PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 403456
Common NameSELMODRAFT_403456
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 426aa    MW: 47174 Da    PI: 9.2253
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
403456genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof26.51.4e-08155194442
  zf-Dof   4 kalkcprCds.tntkfCyynnyslsqPryfCkaCrryWtk 42 
             ++++cp C     t+f  +nn+   qPry Ck C+r Wtk
  403456 155 EQIDCPWCGRiWCTRFYDFNNHKPGQPRYHCKPCKRTWTK 194
             68899999762579*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074780.002155194IPR003851Zinc finger, Dof-type
PfamPF027015.7E-7156194IPR003851Zinc finger, Dof-type
SuperFamilySSF481139.58E-67169425IPR010255Haem peroxidase
Gene3DG3DSA:1.10.520.105.1E-23188301No hitNo description
PfamPF001418.2E-47188403IPR002016Haem peroxidase, plant/fungal/bacterial
PROSITE profilePS5087346.692196425IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004612.4E-14223236IPR000823Plant peroxidase
PRINTSPR004612.4E-14242252IPR000823Plant peroxidase
PRINTSPR004581.5E-17243260IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004581.5E-17261273IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004612.4E-14261276IPR000823Plant peroxidase
Gene3DG3DSA:1.10.420.102.3E-24302408No hitNo description
PRINTSPR004612.4E-14308320IPR000823Plant peroxidase
PRINTSPR004581.5E-17309324IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004581.5E-17367382IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004612.4E-14399412IPR000823Plant peroxidase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006979Biological Processresponse to oxidative stress
GO:0055114Biological Processoxidation-reduction process
GO:0098869Biological Processcellular oxidant detoxification
GO:0003677Molecular FunctionDNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MKRKAQDAEI PMLDDLEDEV QGDGWEYEGG LACPPWDPEA LKSFCAMEDW CGEPVMARVK  60
PKEPANKPKI SSNPERPETL SKPSSSEPKR PKTPSEPKRP NISSEPKRPK TSSEPKRAKA  120
SKSCGGEAKT RKNASAKVTP ELRALLAKVR ATLPEQIDCP WCGRIWCTRF YDFNNHKPGQ  180
PRYHCKPCKR TWTKDKGCDA SILLDSKGSI KSERDSDKNF GIRRLDFIDR IKLMLEAACP  240
GVVSCADIIV LVARESIVFT RGPTIPMLTG RRDSTAASNA AADRLLPPAT VSVDNFISLF  300
ASKGLSLDES VAIIGAHTIG VGHCVNIVNR LYPNQDSKIS LLFASRLRVQ CPTANPWMLN  360
NITVINNDMT NLVFDNQYFR DLIARFSTNQ QLFLNTFSSA FVKLTSSNVL TGQSGQVRKY  420
CHSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4cuo_A6e-3818242538303BANYAN PEROXIDASE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111PKRPKTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002961516.10.0peroxidase 29
TrEMBLD8QRG90.0D8QRG9_SELML; Uncharacterized protein
STRINGEFJ367760.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.16e-07Dof family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]