PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 402076
Common NameSELMODRAFT_402076
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HB-other
Protein Properties Length: 482aa    MW: 53903 Da    PI: 6.0667
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
402076genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.9e-10202250654
               S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               ++ ke le+ e++F++++ p+ + ++ + + ++++ ++V  WF NrR+ 
    402076 202 RIRKEHLETFEKVFQRTKRPTGALIQNIVELTHVPRKRVLDWFENRRQE 250
               57899******************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.09194254IPR001356Homeobox domain
SuperFamilySSF466891.54E-8198256IPR009057Homeodomain-like
CDDcd000868.51E-8200251No hitNo description
SMARTSM003897.6E-4200258IPR001356Homeobox domain
PfamPF000462.2E-7202250IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-9202258IPR009057Homeodomain-like
SuperFamilySSF561127.52E-10285400IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.101.8E-7323396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVEAATEKAF AKRQKTTTSY VGIGRQVIES DDYNFSCSSE ITTITYLLEQ VGQKSLIDLA  60
LEEARTRDKE MDDKGSSAGN WSDIPGSSDK PDYSFRTADT AALSWSLVAF VMELKDELAE  120
VYTECLGETT ARLNAIKRAQ SSRKFAYAES DEEEDKPEDQ TGTQEQDSEA GKEENDSPRV  180
ERIGLPGDTQ GTGPKAWYGK KRIRKEHLET FEKVFQRTKR PTGALIQNIV ELTHVPRKRV  240
LDWFENRRQE HAARRKDWEL LISAELRRYP CLSMIRSKVG QSLTDVAVKI CPGMDDELFV  300
LGMLTEKKVA GVLPILYSGK LQNGDCYLVT RYCQQITLDM QAEAILSLAR GVAMTLGRFS  360
REGVVHGDVS IGNIVFGTDR HGGIHPYLVD FGSAVTGGLP VSFLRGGVSR ATRQDGRAVS  420
PTEAADRKTR CFSLESEFQE EVIDKCKRAG PVVAIRRLRD LFWKCGYNEN VKVDQFMQCL  480
I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024531463.11e-105uncharacterized protein LOC9656249
TrEMBLD8QPI10.0D8QPI1_SELML; Uncharacterized protein
STRINGEFJ382850.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.16e-17overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]