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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 39529 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | HB-other | ||||||||
Protein Properties | Length: 63aa MW: 7686.69 Da PI: 10.9769 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.7 | 7.3e-12 | 11 | 58 | 10 | 54 |
HHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 e ++L + ++yp+ +e+ LA+++gL+ +q+ +WF N+R + 39529 11 EARQQLLDWWSqhqDHPYPNGDEKSNLAQSTGLEPKQINNWFINQRKR 58 4445554444422169******************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-18 | 1 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.2E-8 | 1 | 63 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.621 | 1 | 62 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-28 | 5 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.32E-10 | 11 | 62 | No hit | No description |
Pfam | PF05920 | 2.8E-18 | 19 | 58 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
KKKRKKKIPK EARQQLLDWW SQHQDHPYPN GDEKSNLAQS TGLEPKQINN WFINQRKRHW 60 PQA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 5 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024535927.1 | 5e-28 | uncharacterized protein LOC112348098 | ||||
Swissprot | P56667 | 1e-23 | KNX10_MAIZE; Homeobox protein knotted-1-like 10 (Fragment) | ||||
TrEMBL | D8RVM3 | 8e-27 | D8RVM3_SELML; KNOX transcription factor | ||||
TrEMBL | D8S2C7 | 4e-26 | D8S2C7_SELML; KNOX transcription factor | ||||
STRING | EFJ21442 | 7e-27 | (Selaginella moellendorffii) | ||||
STRING | EFJ23982 | 1e-27 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-20 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | 39529 |
Publications ? help Back to Top | |||
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