PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 39429 | ||||||||
Common Name | ABI3C-1, SELMODRAFT_451619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | B3 | ||||||||
Protein Properties | Length: 83aa MW: 9837.5 Da PI: 9.13 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.1 | 2.5e-16 | 1 | 81 | 5 | 81 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 l+psdv+++gr+vlpkk ae++ + +e++t+++ed ++ +W +++++ ++ks++y+l+ ++ eF +++ LkegD + 39429 1 LKPSDVGNLGRIVLPKKEAESClpYLTVREGMTIVMEDlTTAYKWHMRYRFwpNNKSRMYLLE-NTGEFIRSHCLKEGDLLR 81 579*********************6666799*******5556*******99777777777777.***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 3.88E-21 | 1 | 83 | No hit | No description |
PROSITE profile | PS50863 | 10.447 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0099 | 1 | 83 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-23 | 1 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-20 | 1 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.3E-13 | 1 | 82 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
LKPSDVGNLG RIVLPKKEAE SCLPYLTVRE GMTIVMEDLT TAYKWHMRYR FWPNNKSRMY 60 LLENTGEFIR SHCLKEGDLL RLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 4e-30 | 1 | 83 | 17 | 99 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 4e-30 | 1 | 83 | 17 | 99 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002973460.2 | 8e-40 | regulatory protein viviparous-1 | ||||
Refseq | XP_002993595.1 | 8e-40 | regulatory protein viviparous-1 | ||||
Swissprot | P26307 | 2e-35 | VIV1_MAIZE; Regulatory protein viviparous-1 | ||||
TrEMBL | D8R649 | 4e-52 | D8R649_SELML; Uncharacterized protein ABI3C-1 | ||||
TrEMBL | D8SGB6 | 4e-52 | D8SGB6_SELML; Uncharacterized protein ABI3C-2 | ||||
STRING | EFJ16661 | 7e-53 | (Selaginella moellendorffii) | ||||
STRING | EFJ32605 | 6e-53 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP788 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-37 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 39429 |
Entrez Gene | 9652812 |
Publications ? help Back to Top | |||
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