PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 39384 | ||||||||
Common Name | SELMODRAFT_39381, SELMODRAFT_39384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | HSF | ||||||||
Protein Properties | Length: 92aa MW: 10911.2 Da PI: 9.6021 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.1 | 1e-36 | 2 | 92 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++ + ++sws++g+sfvv+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll++i 39384 2 FLTKTYDMIDDASSDPVVSWSSKGTSFVVWNPPEFARDLLPQYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEEFVRGDRSLLRNIT 89 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 rkk 39384 90 RKK 92 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.86E-35 | 1 | 91 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.6E-57 | 1 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.6E-39 | 1 | 91 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.7E-21 | 2 | 25 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.5E-33 | 2 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.7E-21 | 40 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 41 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.7E-21 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
PFLTKTYDMI DDASSDPVVS WSSKGTSFVV WNPPEFARDL LPQYFKHNNF SSFVRQLNTY 60 GFRKVDPDRW EFANEEFVRG DRSLLRNITR KK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-26 | 2 | 91 | 20 | 120 | Heat shock factor protein 1 |
5d5u_B | 8e-26 | 2 | 91 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-26 | 2 | 91 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-26 | 2 | 91 | 29 | 129 | Heat shock factor protein 1 |
5hdg_A | 7e-26 | 2 | 91 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 7e-26 | 2 | 91 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 7e-26 | 2 | 91 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 7e-26 | 2 | 91 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 7e-26 | 2 | 91 | 10 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002994026.2 | 9e-63 | heat stress transcription factor A-2e isoform X2 | ||||
Swissprot | Q40152 | 3e-47 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | D8SX17 | 3e-61 | D8SX17_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ04908 | 4e-62 | (Selaginella moellendorffii) | ||||
STRING | EFJ11006 | 4e-62 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 5e-49 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | 39384 |
Entrez Gene | 9637061 | 9652001 |
Publications ? help Back to Top | |||
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