PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 358858
Common NameARALYDRAFT_358858
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 147aa    MW: 15819.5 Da    PI: 7.9708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
358858genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.72.5e-0798119123
     AP2   1 sgykGVrwdkkrgrWvAeIrdps 23 
             +++kGVr ++ +g+W AeI+dp+
  358858  98 KKHKGVRKKP-SGKWSAEIWDPT 119
             589****999.7*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-599124IPR001471AP2/ERF domain
PROSITE profilePS510329.78399146IPR001471AP2/ERF domain
SMARTSM003800.00799142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDNSENVPSY DQNENLTPVA PSPPSSSSSY LTRDQEHGIM VSALRQVISN SGSDTSSSHW  60
IAGEALPHPD AGPCPLCGAT GCSGCAFQQG QEEIKKVKKH KGVRKKPSGK WSAEIWDPTL  120
RVRRRMENKL ERRGTKNGEG SQEGDG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap358858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871491.16e-88putative ethylene-responsive transcription factor ERF121
SwissprotQ38Q401e-54EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLD7MKU51e-104D7MKU5_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80026451e-105(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.12e-42ERF family protein