PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 358128 | ||||||||
Common Name | ARALYDRAFT_358128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 29122.4 Da PI: 5.4723 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 43.4 | 1e-13 | 10 | 90 | 3 | 79 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknratk 79 G++F+Pt ee++++yLk+k++g+++ +i d+y ePw L++ + +e+ewy+Fs+r++ ++ +g+++n++ k 358128 10 EGIHFDPTYEEVIHKYLKPKLRGEDCGD--FILMKDVYAKEPWLLDHpnNSFFKEDEWYYFSTRNQISEkkigRGTNTNKKQK 90 599*********************9665..788899*********74224344889******998766533334555555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.143 | 8 | 174 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-19 | 9 | 132 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-8 | 10 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MTMEYYKEDE GIHFDPTYEE VIHKYLKPKL RGEDCGDFIL MKDVYAKEPW LLDHPNNSFF 60 KEDEWYYFST RNQISEKKIG RGTNTNKKQK RGDGASAPSS ESGWIMDEFV IVLPKPDEDK 120 FQELVVCKIH KKKESKKDHQ HEASSSSEQQ PIKKRKSKKS KKEHESVLAA SSEQQQPLLC 180 GCNESEIPKI ASSPCSAAET ERNGEQSGEG NMVHQTEKNA MEMTREEEGD WIADNDIFVN 240 RQYRDQPYSW I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 358128 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL133314 | 3e-64 | AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12. | |||
GenBank | CP002686 | 3e-64 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864594.1 | 1e-165 | NAC domain-containing protein 19 | ||||
TrEMBL | D7MR65 | 0.0 | D7MR65_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_8001915 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2607 | 13 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 1e-11 | NAC domain containing protein 88 |
Link Out ? help Back to Top | |
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Phytozome | 358128 |
Entrez Gene | 9302385 |