PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB

Protein Properties

Length: 321aa MW: 35909.6 Da PI: 6.435

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
357679	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv +++ +G+g W+t ++ g++R++k+c++rw +yl 357679 14 KGPWTPEEDEKLVGYIQTHGPGKWRTLPKNAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.7	9.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++ +E+e +++++++lG++ W++Ia +++ gRt++++k++w+++ 357679 67 RGEFSLQEEETIIQLHRLLGNK-WSAIAIHLP-GRTDNEIKNYWNTH 111 899*****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.3E-25	7	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.092	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.0E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	9.8E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.19E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.84	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	6.41E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGKSSSSEES EVKKGPWTPE EDEKLVGYIQ THGPGKWRTL PKNAGLKRCG KSCRLRWTNY 60 LRPDIKRGEF SLQEEETIIQ LHRLLGNKWS AIAIHLPGRT DNEIKNYWNT HIKKKLLRMG 120 IDPVTHCPRI NLLQLSSFLT SSLFKSMSQP MNTPFDLTTS SINPDILNHL TASLNNVQTE 180 SYQPNQQLQN DLNNDQTTFT GLLNSSTPPV QWQNNGEYLG DYLSYNGSGD PSMNQVPQTG 240 NYSSAAFVSD QINDGENFKA GWNFSSSMLH GTSSSSSTPL DSSSNFYVNG GSEDDRESYG 300 SDMLMFHHHH DQNNNALNLS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-30	11	116	1	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:19517001, ECO:0000305\|PubMed:12857823}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00563	DAP	Transfer from AT5G54230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	357679

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:12857823, ECO:0000269\|PubMed:19517001, ECO:0000269\|PubMed:8980549}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF175991	0.0	AF175991.1 Arabidopsis thaliana putative transcription factor (MYB49) mRNA, complete cds.
GenBank	AY059820	0.0	AY059820.1 Arabidopsis thaliana Myb-related transcription factor-like protein (At5g54230; MDK4.5) mRNA, complete cds.
GenBank	AY081512	0.0	AY081512.1 Arabidopsis thaliana Myb-related transcription factor-like protein (At5g54230) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866030.1	0.0	transcription factor MYB102
Refseq	XP_002866031.1	0.0	transcription factor MYB102
Swissprot	Q9LDR8	4e-86	MY102_ARATH; Transcription factor MYB102
TrEMBL	D7MU68	0.0	D7MU68_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_8001466	0.0	(Arabidopsis lyrata)
STRING	fgenesh1_pm.C_scaffold_8001114	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14465	17	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54230.1	1e-175	myb domain protein 49

Link Out ? help Back to Top
Phytozome	357679
Entrez Gene	9300397

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Zhu L,Guo J,Ma Z,Wang J,Zhou C Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]