PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 357630 | ||||||||
Common Name | ARALYDRAFT_357630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 185aa MW: 21318.1 Da PI: 5.628 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.1 | 8.2e-41 | 5 | 132 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvg 101 +G++F+Ptdeelv +yL++k+ g+++ + e+i e++iy+++Pw+Lp + +++++++ w+fFs r+ + a +r++r+t+sgyWk tg+ ++++ ++++g 357630 5 VGYEFRPTDEELVGFYLRNKLLGNSCLI-EAIGELNIYQFDPWELPsQsMMRSNDTVWFFFSGREITFAIRNRQSRTTASGYWKITGQPSVIKERsiFQRVIG 106 79***********************999.89**************96347778999*********************************999998777789** PP NAM 102 lkktLvfykgrapkgektdWvmheyr 127 kktLvf+kg++p+ge+t+W+mhey+ 357630 107 QKKTLVFHKGKSPNGERTHWIMHEYS 132 *************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 44.461 | 3 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-24 | 5 | 132 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-46 | 5 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MMSIVGYEFR PTDEELVGFY LRNKLLGNSC LIEAIGELNI YQFDPWELPS QSMMRSNDTV 60 WFFFSGREIT FAIRNRQSRT TASGYWKITG QPSVIKERSI FQRVIGQKKT LVFHKGKSPN 120 GERTHWIMHE YSDLSLPESQ RTHVVCKVEY TGHDVESVLV DYGPSDFGLL PSLTQEDWDF 180 AFSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-30 | 6 | 131 | 18 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 357630 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864281.1 | 1e-137 | NAC domain-containing protein 69 | ||||
Swissprot | Q9M126 | 2e-43 | NAC69_ARATH; NAC domain-containing protein 69 | ||||
TrEMBL | D7MTJ9 | 1e-136 | D7MTJ9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_8001417 | 1e-136 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 9e-46 | NAC domain containing protein 69 |
Link Out ? help Back to Top | |
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Phytozome | 357630 |
Entrez Gene | 9300357 |
Publications ? help Back to Top | |||
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