PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 357174
Common NameARALYDRAFT_357174
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 281aa    MW: 32271.8 Da    PI: 6.9589
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
357174genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.43.7e-24221270151
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
              k r++Wt+eLH++Fv+ave L G +kA+Pk+ilelm+v+ L++e+v+SHLQ
   357174 221 KRRVVWTKELHKKFVDAVEYL-GLDKAVPKKILELMNVENLSRENVASHLQ 270
              689******************.***************************** PP
2Response_reg44.48.8e-16421482108
                   EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
  Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                   l+ d++ + ++ l++ l+k +y +v+ + +  +a+  l++++  +D+ ++  + ++ d +++l+ei +e  +lpii+++  ++ + + + +  Ga d
        357174  42 LVFDEDSSHLQMLETNLQKFQY-QVTICNEENKAMYALRNHRnrFDIAIIQGNNSDGDMFRFLSEIGSEM-DLPIIIISEDKSVQSVMKWMINGATD 136
                   67799*****************.999999999999999988889**********************7755.8************************* PP

                   EEESS--HHHHH CS
  Response_reg  97 flsKpfdpeelv 108
                   +l Kp++peel+
        357174 137 YLIKPIKPEELR 148
                   **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.11E-2037163IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-2038184No hitNo description
SMARTSM004481.5E-439151IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.8640155IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.47E-1042148No hitNo description
PfamPF000724.3E-1042148IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129410.584218277IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-24218270IPR009057Homeodomain-like
SuperFamilySSF466891.16E-17219274IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24221274IPR006447Myb domain, plants
PfamPF002493.5E-7223270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAKKLEHRGV MANDDGDGPF RDPLPNFSDM FPSNFPEGLR MLVFDEDSSH LQMLETNLQK  60
FQYQVTICNE ENKAMYALRN HRNRFDIAII QGNNSDGDMF RFLSEIGSEM DLPIIIISED  120
KSVQSVMKWM INGATDYLIK PIKPEELRII FKHLVKKVRE RRSVVTGEAE EKAGGEKSSS  180
VGDSTIRNPN KRKRSMCLDA EVNEEDRHDH NDRACAASSK KRRVVWTKEL HKKFVDAVEY  240
LGLDKAVPKK ILELMNVENL SRENVASHLQ VTFLLVYYYT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-18218270254ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap357174
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168721e-128AB016872.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21P3.
GenBankCP0026881e-128CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863976.20.0putative two-component response regulator-like APRR4 isoform X2
RefseqXP_020881199.10.0putative two-component response regulator-like APRR4 isoform X1
SwissprotQ9FJ161e-157APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLD7MNQ40.0D7MNQ4_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80009610.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-148pseudo-response regulator 4