PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 356702
Common NameARALYDRAFT_356702
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 289aa    MW: 33769.4 Da    PI: 6.1296
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
356702genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.5e-35191121103
                   HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   aFl+k+y+i+ed+ +++++sws+++nsf+v+++e+fa   Lp+ Fkh+nf+SFvRQLn+YgFkk+++e+         weF++++F kg+++ll++i
        356702  19 AFLTKTYNIVEDSCTNNIVSWSRDNNSFIVWEPETFALIFLPRCFKHNNFSSFVRQLNTYGFKKIDTER---------WEFANEYFLKGERHLLKNI 106
                   69****************************************************************999.........******************* PP

                   XXXXXX CS
  HSF_DNA-bind  98 krkkse 103
                   kr+k++
        356702 107 KRRKTS 112
                   ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-5216109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-3416109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3516109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.3E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-172043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-175870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-177183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEYNLPLPLE GLKETGPAAF LTKTYNIVED SCTNNIVSWS RDNNSFIVWE PETFALIFLP  60
RCFKHNNFSS FVRQLNTYGF KKIDTERWEF ANEYFLKGER HLLKNIKRRK TSSQTQTQSL  120
EGGRFRLEGE IHELRRDRLA LEVELVRLRR KQESVKTYLH LMEEKLKVTE VKQEMMINFL  180
LKKIKKPSFL QSLRKRKLQG IKNREQRQEV ISSHGVEDHE TFAKAEPEEC GDDIGDQFGG  240
VFSYGDELHI ASMEDQGQEG DEMEMDSEGI WKGFVLSEEM CDLGKHFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-22181143110Heat shock factor protein 2
5d8l_B3e-22181143110Heat shock factor protein 2
5d8l_D3e-22181143110Heat shock factor protein 2
5d8l_F3e-22181143110Heat shock factor protein 2
5d8l_H3e-22181143110Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LKNIKRR
2192197LRKRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00541DAPTransfer from AT5G43840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap356702
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266510.0AB026651.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863630.10.0heat stress transcription factor A-6a
SwissprotQ1PDN30.0HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBLD7MNK40.0D7MNK4_ARALL; AT-HSFA6A
STRINGfgenesh1_pg.C_scaffold_80004890.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156831416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43840.11e-171heat shock transcription factor A6A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]