PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 356449
Common NameARALYDRAFT_356449
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 281aa    MW: 31144 Da    PI: 8.4661
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
356449genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.1e-332377155
  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
             kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
   356449 23 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 77
             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.2852080IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-312079IPR009057Homeodomain-like
SuperFamilySSF466892.15E-162380IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-242378IPR006447Myb domain, plants
PfamPF002491.6E-92576IPR001005SANT/Myb domain
PfamPF143791.4E-19129174IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MERVNLGGLG YDNGGVMMTR DPKPRLRWTA DLHDRFVDAV AKLGGADKAT PKSVLKLMGL  60
KGLTLYHLKS HLQKYRLGQQ QGKKQNRTEQ NKENAGSSYV HFDNCSQGGI SNESRFDSGN  120
QRQSGNVPFA EAMRHQVDAQ QRFQEQLEVQ KKLQMRMEAQ GKYLLTLLEK AQKSIPCGNV  180
GETDKGQFSD FNLALSGLVG SDHKNEKVGL VANISHLNAD SSEDFRLCGE QEKIETGDAC  240
VKPESGFVHF DLNSKSGYDL LNCGKYGIEV KPNVITDRHQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap356449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0120030.0BT012003.1 Arabidopsis thaliana At5g45580 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863468.10.0myb family transcription factor PHL11
SwissprotC0SVS40.0PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLD7MTE00.0D7MTE0_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80002360.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124952530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.10.0G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]