PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 356189
Common NameARALYDRAFT_356189
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YC
Protein Properties Length: 249aa    MW: 28422.4 Da    PI: 4.8679
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
356189genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC106.51.7e-3360154499
   NF-YC   4 sfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
             +fw ++  +    ++ +lPlarikk++k+d++vkm+s+++ vll+kac++fi e+tlr+w h+++++r+t++ +di +a+++++i+d l d v   
  356189  60 KFWVHHN-SIGLHEKLDLPLARIKKVMKSDPQVKMVSSDSHVLLAKACDIFIEEVTLRAWRHTQSCSRNTIQSCDIYKALKQSVIYDELNDLVSFG 154
             5666543.333345779**************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.83E-2168142IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.8E-2473137IPR009072Histone-fold
PfamPF008086.4E-1876138IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVRPIVATSS VNPNPTVEES FVMMEPSEHY VNSVRQIHDQ SWLVCTTDQE RHLLNQDLVK  60
FWVHHNSIGL HEKLDLPLAR IKKVMKSDPQ VKMVSSDSHV LLAKACDIFI EEVTLRAWRH  120
TQSCSRNTIQ SCDIYKALKQ SVIYDELNDL VSFGQRSVTH QGVPQDVVQQ QLFPSANVNV  180
PEMKDPIDID KIQQQCLYFQ TTEHFIDTGE FELDPNLIFD VSAMDCTYGF DCAVRIVLVE  240
AVFEEKLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-237615142117HapE
4g92_C4e-237615142117HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap356189
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872129.11e-105nuclear transcription factor Y subunit C-10 isoform X1
RefseqXP_020872130.11e-105nuclear transcription factor Y subunit C-10 isoform X2
TrEMBLD7MK460.0D7MK46_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70033620.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1910667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.12e-37nuclear factor Y, subunit C12