PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

355644

Common Name

ARALYDRAFT_355644

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 329aa MW: 37738.1 Da PI: 6.3958

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
355644	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	48.5	2.8e-15	10	96	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ekew+ s+r+k + ++k+r+ tk gyW+atg +e+ + ++ +vg k+ L+++ +++ ++ktdW+m ey+l 355644 10 KGNEKEWFIISERNKVDQGLSKKKRVgngatkqkrgdTKGGYWHATGAAQEINT-GEGVVGYKTALAYFVRTRSGSVKTDWLMIEYSL 96 3467799999999998886666666667777777777**************9.999*******87777789*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.757	1	115	IPR003441	NAC domain
SuperFamily	SSF101941	8.89E-21	10	115	IPR003441	NAC domain
Pfam	PF02365	5.1E-7	15	96	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MKALKMGFEK GNEKEWFIIS ERNKVDQGLS KKKRVGNGAT KQKRGDTKGG YWHATGAAQE 60 INTGEGVVGY KTALAYFVRT RSGSVKTDWL MIEYSLHHTC HNNDKDYTLC KIYMTPQAIK 120 KTKEVEEENK KQKKGEGVSC GSINGSKTAI AHVEALEQQQ PRNVEYHQPH QSQGPLDSYQ 180 LQPAHDIVYQ QPQHFSQAPI DSYHQQPSHD VLYQQPHTPL LLPDLFSFEI EYNQKEQSLM 240 MQDSRSGMEM TGWSNDKSTQ EDLLDMSKDD RIFSMDELFD NVEEHGTVVT QQQQQQQQQH 300 QLSTPILTTE EINQDEFFIL VLKNKKRE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	355644

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020875176.1	1e-157	uncharacterized protein LOC9304562
TrEMBL	D7MI60	0.0	D7MI60_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_7002817	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	4e-75	NAC domain containing protein 63

Link Out ? help Back to Top
Phytozome	355644
Entrez Gene	9304562