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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
355494 |
Common Name | ARALYDRAFT_355494 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
B3 |
Protein Properties |
Length: 500aa MW: 56701 Da PI: 9.9957 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
355494 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 40.2 | 6.1e-13 | 26 | 95 | 16 | 94 |
EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 16 lvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
+ +pk f +++ g ++ + l++ s +W++k+ ++++ +tkGW+eF+ ++L++gD++vF+++g+ l++
355494 26 ILIPKAFYSKYleGRQEGN--AAELRSdASEITWNIKI--DGRR----MTKGWEEFAVGHNLQVGDILVFRHEGN----LLF 95
789********96555444..5666554999*******..9998....9**********************7663....333 PP
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2 | B3 | 56.2 | 6.1e-18 | 375 | 459 | 4 | 90 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
v ++ ++l++++l+lp + +++ ++k+ +++l++++gr+W++ l+y+k+sg++ +t GWk+F++ang ++g +++F l+++ ++
355494 375 VSVTVSNLREDILYLPIRLSRSNILDKKF-HEISLMNKQGRTWTLSLKYSKSSGKFRITHGWKSFCEANGQNAGCTFLFNLVRN-RT 459
56788999***************888766.49************************************************9985.33 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 500 aa
Download sequence Send
to blast |
MANSMFSSSA KPHFLKPILP GFKTYILIPK AFYSKYLEGR QEGNAAELRS DASEITWNIK 60 IDGRRMTKGW EEFAVGHNLQ VGDILVFRHE GNLLFHVTPF GLSCCEILYS QNDEKVVKDK 120 TGKVTRYKTV KKTAKNECSS VDTDFVYLPR GFTTSSGLSK LCNEIILMDE KSRPSTLKLC 180 YHKSRKPPVL RIYPLERDED NIGNHSKKIK QEVEHETVKE ETNVESGKLK RDGLLKKDPQ 240 KVCSSSHDTI FVVPGTASNQ RNDSFHLPKG FTTSSGLSKL CKKIIFMDEK DNRFTVRRGW 300 RGFCCRNGHK TGCFLRLILV RNGKTPVLRI FPLEKDESSI GKNSKEIKQE VEHESAKEEK 360 NVESLSLSDN SSFVVSVTVS NLREDILYLP IRLSRSNILD KKFHEISLMN KQGRTWTLSL 420 KYSKSSGKFR ITHGWKSFCE ANGQNAGCTF LFNLVRNRTS PVLLMTSLWD DIHQSKTASF 480 DNSVGPRRSS MGQEVKIMG*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB046432 | 1e-114 | AB046432.1 Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:F22D12. |
GenBank | CP002688 | 1e-114 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
GenBank | F18O9 | 1e-114 | AF296831.1 Arabidopsis thaliana BAC F18O9. |