PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 354789
Common NameARALYDRAFT_354789
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 778aa    MW: 88678 Da    PI: 6.0581
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
354789genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.1e-14466510146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+ WT+eEd++l  av ++G  +W ++a+ ++ gRt+ qc +rw k
           354789 466 RKEWTAEEDDQLRAAVDLFGESDWQSVANVLQ-GRTGPQCSNRWKK 510
                      789*****************************.***********98 PP
2Myb_DNA-binding50.35.6e-16519561144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      + +W+ eEd++l+ av+++G+++W++I + ++ gRt+ qc++rw
           354789 519 KRNWSSEEDKRLKVAVTLFGTKNWRKIGQFVP-GRTGTQCVERW 561
                      569*****************************.*********** PP
3Myb_DNA-binding45.12.3e-14572614246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+eEd +l +a k++G   W+++a++m   Rt+ qc  rw +
           354789 572 GKWTKEEDAKLREAMKEHGHC-WSKVASYMS-CRTDSQCARRWKS 614
                      79*****************99.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.169314403IPR017877Myb-like domain
SMARTSM007173.7318409IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-6321337IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-6383419IPR009057Homeodomain-like
SuperFamilySSF466894.69E-12391457IPR009057Homeodomain-like
PROSITE profilePS500908.026408460IPR017877Myb-like domain
SMARTSM007171.1E-5412462IPR001005SANT/Myb domain
CDDcd001670.00281415460No hitNo description
Gene3DG3DSA:1.10.10.601.5E-11420469IPR009057Homeodomain-like
SuperFamilySSF466891.38E-19445514IPR009057Homeodomain-like
PROSITE profilePS5129422.097461516IPR017930Myb domain
SMARTSM007171.8E-13465514IPR001005SANT/Myb domain
PfamPF002491.8E-12466510IPR001005SANT/Myb domain
CDDcd001672.51E-10468512No hitNo description
Gene3DG3DSA:1.10.10.603.9E-16470514IPR009057Homeodomain-like
SuperFamilySSF466892.19E-26516612IPR009057Homeodomain-like
PROSITE profilePS5129414.266517565IPR017930Myb domain
SMARTSM007174.3E-14518567IPR001005SANT/Myb domain
PfamPF002491.6E-13519562IPR001005SANT/Myb domain
CDDcd001675.45E-11521565No hitNo description
Gene3DG3DSA:1.10.10.603.1E-17521568IPR009057Homeodomain-like
PROSITE profilePS5129423.383566620IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-17569615IPR009057Homeodomain-like
SMARTSM007172.4E-12570618IPR001005SANT/Myb domain
PfamPF002493.8E-13572615IPR001005SANT/Myb domain
CDDcd001672.79E-10573615No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MNREGLYEVD DDDDDDDDDI GEDLEELRRA FIVTEAKGLP SDSENDEEDD LEMLRSIKSQ  60
LASSTTNVGL SVPSDSESEN HFEMLRSIKS QLALSMDEDE DEDGAFETLR AIRRRFFAYE  120
NFDVEGNFMN DSSHEKKKKQ VHASDNEPST EILSRSNTCE SFPDHGKSAV TEPDSETSIE  180
QLDHLETCQS SLMPATSSGF PEAALAFLDA IRKNRLYQKF LRRQLSEIEA TIEQNEKHRK  240
NVKIVKDFEA SCKRITKQAL SRGKDPRVEL ISTPKSRPDS GSSGGNDKKT SYLTMGPPEN  300
TCVENYRMAL EKYPVSVDRA NWTTEEKENL AKGLKQQVQD TLIREAFERS SDLEGSTDGI  360
NTILEGIKSL EITPEMIRQF LPKVNWDQLD IKNRSAAECE ARWMSSDDPL INNGPWTVAE  420
DNYIRLFTKN KGFTDWLDIA VSLGTNRTPF QCLARYQRSL NPDILRKEWT AEEDDQLRAA  480
VDLFGESDWQ SVANVLQGRT GPQCSNRWKK SLHPSRTRKR NWSSEEDKRL KVAVTLFGTK  540
NWRKIGQFVP GRTGTQCVER WGNSLDPKLK FGKWTKEEDA KLREAMKEHG HCWSKVASYM  600
SCRTDSQCAR RWKSLYPHLA HLRQEARRLQ KEATIGNFVD RESERPDLVV GDFLALAEIS  660
LEPEEPVLTK KRKPRHTKKA DTECESEAVC ADTERQPKKQ RKGLERCSGD VCRKKNEKTE  720
DNVKEKKQRR KRTSVAGTSN NSSVTTNCPQ VKIGIQKLKP RRKVSALVPI ENLDAQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-293756149159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-293756149159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712731RKKNEKTEDNVKEKKQRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap354789
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867927.10.0snRNA-activating protein complex subunit 4
TrEMBLD7MG960.0D7MG96_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70019620.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1