PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

354358

Common Name

ARALYDRAFT_354358

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GRF

Protein Properties

Length: 432aa MW: 47568.4 Da PI: 7.1948

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
354358	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.6	5.1e-24	182	225	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ep+rC+RtDGKkWRCsr+v++++k+CErH h++r rsrk++e+ 354358 182 LEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHKSRPRSRKHVES 225 69***************************************997 PP
2	QLQ	53	1e-18	112	146	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 aF+ aQ+q+L++Q +yKy++a++PvPpeLl + + 354358 112 AFSEAQWQELERQRNIYKYMMASLPVPPELLTPFP 146 8******************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.0E-11	111	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-12	112	144	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.035	112	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.842	181	225	IPR014977	WRC domain
Pfam	PF08879	1.1E-19	183	224	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MGTRAERKED FVGGFGFGVV ENSHKDVMVL PHHHYHPSYS SPSSYSSLCY CSAGVSDPMF 60 SVSSNQAYTS SYSNMFSHTG SGSTAVTVAD PFFSLSSSGE MRRSMNEDAG AAFSEAQWQE 120 LERQRNIYKY MMASLPVPPE LLTPFPKNHP SNTDPDVTVA VAKGGSLQLG IASSASNNSA 180 DLEPWRCKRT DGKKWRCSRN VIPDQKYCER HTHKSRPRSR KHVESSHQSS HHNDIPTTKN 240 DTSQFARTYP QFYGQPVSQI PVLSTLPSAS SSYDHHRGLR WFRKEDDAIG TLNPEIHEAV 300 QLKVGSSREL KRGFDYDLNF RQKEPVVDHS FGTLQGLLSL KETPQHNQET RRFVVEGKQD 360 EAMGSSLTLS MAGGGMEEAE GTNQHQWVSH EGPSWLYSTT PGGPLAEALC LGVSNNPSSS 420 TTTSSCSRSS S*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MGTRAERKED FVGGFGFGVV ENSHKDVMVL PHHHYHPSYS SPSSYSSLCY CSAGVSDPMF  60
SVSSNQAYTS SYSNMFSHTG SGSTAVTVAD PFFSLSSSGE MRRSMNEDAG AAFSEAQWQE  120
LERQRNIYKY MMASLPVPPE LLTPFPKNHP SNTDPDVTVA VAKGGSLQLG IASSASNNSA  180
DLEPWRCKRT DGKKWRCSRN VIPDQKYCER HTHKSRPRSR KHVESSHQSS HHNDIPTTKN  240
DTSQFARTYP QFYGQPVSQI PVLSTLPSAS SSYDHHRGLR WFRKEDDAIG TLNPEIHEAV  300
QLKVGSSREL KRGFDYDLNF RQKEPVVDHS FGTLQGLLSL KETPQHNQET RRFVVEGKQD  360
EAMGSSLTLS MAGGGMEEAE GTNQHQWVSH EGPSWLYSTT PGGPLAEALC LGVSNNPSSS  420
TTTSSCSRSS S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	354358

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL109619	0.0	AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBank	AL161561	0.0	AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBank	ATAC002343	0.0	AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869735.1	0.0	growth-regulating factor 8
Swissprot	Q9SU44	0.0	GRF8_ARATH; Growth-regulating factor 8
TrEMBL	D7M8X3	0.0	D7M8X3_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_7001531	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7836	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	0.0	growth-regulating factor 8

Link Out ? help Back to Top
Phytozome	354358
Entrez Gene	9305806

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]