PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 353664 | ||||||||
Common Name | ARALYDRAFT_353664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 913aa MW: 103421 Da PI: 9.869 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.8 | 2.7e-15 | 18 | 98 | 8 | 93 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 s ++ +++l++p f+++h ++k++ ++l+l++ s r+W+vkl ++++ +++GW +F a+ L++ D++vF++dg+++f+ + 353664 18 SLAGHNSNLIIPDAFFTAHLKDKTGLTKLKLTSdASDRTWDVKL--NGRR----FAGGWDDFSAAHCLRDDDVLVFRHDGKMSFSKH 98 55678889***********88889999****997899*******..8887....99**********************999988655 PP | |||||||
2 | B3 | 40.7 | 4.1e-13 | 91 | 173 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 g ++++k+f +++g+ k+ + l+++sg+sW + l+++++ g+ ++++ W++F++an++k g + Fkl++ +++++++++++ 353664 91 GKMSFSKHFSRTNGLTKRW-CVIDLMNLSGESWALGLRHNNRTGQDYIRGHWRSFCRANEMKPGSSYRFKLVR-NGTRPLLRLCS 173 579999*******999865.59*****************99999999************************98.77779999987 PP | |||||||
3 | B3 | 78.1 | 9.7e-25 | 208 | 304 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f++v+ ++++ +sg l+lp++fa+e+g+k++e +++l d++g +W ++ k++g+++++ GWk+F++an+L++gD++++++++ +++++++k+++k 353664 208 FLTVTFKHYMIQSGHLRLPRSFARENGIKEAE--EIILVDKNGVKWPSYVASAKQRGEFYMAHGWKRFCEANKLNTGDTFTLEFVRGEDTTPMLKFCSK 304 7889999********************99766..8***************999********************************99**********97 PP | |||||||
4 | B3 | 41.5 | 2.5e-13 | 449 | 527 | 11 | 96 |
HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++r ++p +f++++ + k++s++l+l++ r+Wevkl ++++ +++GW++F + L++ D+++F+ +g+++f +v++ 353664 449 VQQSRQMIPAEFFSTYVEGKNQSTKLKLTSdALDRTWEVKL--NGRR----FARGWENFSTVHSLQDDDVLIFREIGDMTF--HVTA 527 567889**********55567999***9996778*******..8887....99*********************8898888..6665 PP | |||||||
5 | B3 | 69.5 | 4.4e-22 | 581 | 674 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++s++l+++rl+l k fa+++g+++++ ++ l++++g+sW+v l+y+ ++ +++GW++F+ angL++g f Fkl++ ++++++++++++ 353664 581 AHVTSSNLSRDRLSLIKGFARSNGLNQRCC-EIDLMNQHGKSWTVGLRYSTANEQASISGGWRDFCLANGLEAGSFYRFKLVQ-NGARPLLRLCSE 674 5689**********************8875.******************9999999*************************99.788899999986 PP | |||||||
6 | B3 | 71.6 | 9.8e-23 | 701 | 798 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f++ + ++++lksg+l ++++fa e+++k++e ++tl d++g W ++ ++++g+y+l+kGW++F+ an+Lk+g+++++++++ +++++++k+++k 353664 701 FLTMTFKPYMLKSGQLHISRPFAIENEIKEAE--DITLVDKNGGNWPSYVASgDGQGGKYYLAKGWRGFCAANRLKTGETFTLEFVRGESTTPMLKFCSK 798 66777899******************999777..7***************767999999***************************99**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-15 | 6 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-14 | 8 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.617 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.67E-13 | 13 | 94 | No hit | No description |
SMART | SM01019 | 3.6E-15 | 15 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.34E-13 | 79 | 173 | No hit | No description |
Pfam | PF02362 | 8.5E-12 | 91 | 174 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.06E-11 | 92 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-11 | 95 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.1E-8 | 99 | 175 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.701 | 112 | 174 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-21 | 201 | 304 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-21 | 205 | 304 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.24E-17 | 208 | 303 | No hit | No description |
PROSITE profile | PS50863 | 15.524 | 208 | 304 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.3E-33 | 208 | 305 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-24 | 208 | 304 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.40E-10 | 439 | 526 | No hit | No description |
SMART | SM01019 | 2.8E-15 | 439 | 531 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.589 | 439 | 531 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-8 | 449 | 525 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-14 | 449 | 531 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-13 | 450 | 533 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-21 | 571 | 673 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-20 | 574 | 673 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.03E-20 | 578 | 673 | No hit | No description |
SMART | SM01019 | 2.0E-27 | 578 | 675 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.452 | 578 | 674 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-20 | 581 | 674 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-17 | 695 | 798 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-18 | 700 | 798 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.254 | 701 | 798 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.32E-15 | 701 | 789 | No hit | No description |
SMART | SM01019 | 1.2E-27 | 701 | 799 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-21 | 701 | 798 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 913 aa Download sequence Send to blast |
MANPLSSSQS NRPFFVRSLA GHNSNLIIPD AFFTAHLKDK TGLTKLKLTS DASDRTWDVK 60 LNGRRFAGGW DDFSAAHCLR DDDVLVFRHD GKMSFSKHFS RTNGLTKRWC VIDLMNLSGE 120 SWALGLRHNN RTGQDYIRGH WRSFCRANEM KPGSSYRFKL VRNGTRPLLR LCSEVIPEGN 180 RSRANGKDNV SEKYSRAAGS ASTKQNKFLT VTFKHYMIQS GHLRLPRSFA RENGIKEAEE 240 IILVDKNGVK WPSYVASAKQ RGEFYMAHGW KRFCEANKLN TGDTFTLEFV RGEDTTPMLK 300 FCSKAKVKIE QEEAPEETET PFQKRARVSA EVGHSRRTQT PNKASHDPKI LQRKQPLQPC 360 SFSDQAKKVK QSIVNILTGI KRFRSELEIK EQSLEAALLE IDALVLNINR GESIGNQQNP 420 QVIIKSRSEV KIRKWNMNFC KPCLYLELVQ QSRQMIPAEF FSTYVEGKNQ STKLKLTSDA 480 LDRTWEVKLN GRRFARGWEN FSTVHSLQDD DVLIFREIGD MTFHVTASGR SFCKVQYISS 540 DEDGADEDDA WTEYSDSKNI ASKKKPRTEA KSSSKNSYLV AHVTSSNLSR DRLSLIKGFA 600 RSNGLNQRCC EIDLMNQHGK SWTVGLRYST ANEQASISGG WRDFCLANGL EAGSFYRFKL 660 VQNGARPLLR LCSETIPEED CYKGNRKEIF SESASMKQSK FLTMTFKPYM LKSGQLHISR 720 PFAIENEIKE AEDITLVDKN GGNWPSYVAS GDGQGGKYYL AKGWRGFCAA NRLKTGETFT 780 LEFVRGESTT PMLKFCSKTK IEQVPLDEER ETQEETETRV EKRARVSAGG GSSRRNQASN 840 KPNADPQNLK PRQPPCSISD RVQKVKQIIE DTLTGVKRIR SELEVKEQNL EASILEIDAL 900 GEKVLEINKI LK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 353664 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493713 | 0.0 | AB493713.1 Arabidopsis thaliana At4g31615 mRNA for hypothetical protein, partial cds, clone: RAAt4g31615. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872305.1 | 0.0 | B3 domain-containing protein REM2 isoform X2 | ||||
Swissprot | Q3E9T2 | 0.0 | REM2_ARATH; B3 domain-containing protein REM2 | ||||
TrEMBL | D7MB45 | 0.0 | D7MB45_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_7000837 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9658 | 15 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31615.1 | 0.0 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 353664 |
Entrez Gene | 9303361 |
Publications ? help Back to Top | |||
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