PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 352381 | ||||||||
Common Name | ARALYDRAFT_352381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 131aa MW: 15395.6 Da PI: 10.2007 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 45.2 | 2.1e-14 | 16 | 45 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk+il+ m+v +Lt+++vkSHLQ+YR 352381 16 RATPKKILRYMGVSDLTMSQVKSHLQMYRN 45 8****************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-7 | 14 | 48 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-13 | 14 | 46 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-13 | 16 | 47 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 131 aa Download sequence Send to blast |
MTDSIVRSYI RSQMPRATPK KILRYMGVSD LTMSQVKSHL QMYRNKKEAN SIQERRMIRQ 60 MKLRQSQQYL QIYERARNVT QDFQNHQRVQ LDITEKVGLN ENRDNDVVVV DDVAIGEEGL 120 SFELTLGRKY * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 352381 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879380.1 | 9e-73 | transcription repressor KAN1 | ||||
TrEMBL | D7M1R7 | 6e-90 | D7M1R7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_6002974 | 9e-91 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G04580.1 | 5e-35 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 352381 |
Entrez Gene | 9310869 |