PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 352380
Common NameARALYDRAFT_352380
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 168aa    MW: 19375.2 Da    PI: 10.4522
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
352380genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like826.5e-261568255
  G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
             p +rWt +L  rFv++ve LGG+  AtPk+il +m+v +Lt++hvkSHLQ+YR 
   352380 15 PSMRWTDDLDIRFVQVVEFLGGERSATPKKILSHMGVRDLTISHVKSHLQMYRK 68
             569**************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1111171IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-241369IPR009057Homeodomain-like
SuperFamilySSF466891.33E-141371IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-241670IPR006447Myb domain, plants
PfamPF002493.3E-91767IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRDLIVRSYI RPKLPSMRWT DDLDIRFVQV VEFLGGERSA TPKKILSHMG VRDLTISHVK  60
SHLQMYRKKK EAESIKARRM IHEMKRRQSQ QYLQIYERAT QFIQNHQRLQ LDNTEKITSS  120
LGSSNKSLYQ SSRVGFNENR DNDVVVAGGG VIGEEGLSLE LTLGHKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMap352380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874801.11e-121putative Myb family transcription factor At1g14600
TrEMBLD7M1R61e-119D7M1R6_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_60029731e-120(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.17e-77G2-like family protein