PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

352378

Common Name

ARALYDRAFT_352378

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 171aa MW: 20154.4 Da PI: 10.3911

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
352378	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	76.4	3.8e-24	16	68	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt +L F ++ve LGG+ kAtPk il++m+v Lt++hvkSHLQ+YR 352378 16 PMRWTDDLDLLFTQVVELLGGERKATPKPILNCMDVRNLTISHVKSHLQMYRK 68 69**************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.6E-23	11	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-13	13	72	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-7	17	67	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	9.1E-22	17	70	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MKKPIVRSYI RSKVPPMRWT DDLDLLFTQV VELLGGERKA TPKPILNCMD VRNLTISHVK 60 SHLQMYRKKK KEEFIKERRM MREMNQRQSR QYLQIYERAR DATQFMQNQQ RPQLDIIEKI 120 TPVLGSSNKF LYQFARERLN ENRNNDVVVA GGSAIGEEEL SLELTLGHKY *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	71	RKKKKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	352378

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874800.1	1e-125	putative Myb family transcription factor At1g14600
TrEMBL	D7M1R3	1e-123	D7M1R3_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_6002971	1e-124	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	4e-55	G2-like family protein

Link Out ? help Back to Top
Phytozome	352378
Entrez Gene	9308767