PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 349389
Common NameARALYDRAFT_349389
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 298aa    MW: 34235.2 Da    PI: 4.7314
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
349389genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.41.1e-33291372103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......XTTSEEEEESXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......kekiweFkhksFkkgkk 91 
                   Fl+k++e++ d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+Y +k+++ +++++         + + weF ++ F+ g++
        349389  29 FLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYSWKNSTMPSASNYCergfrkiEAERWEFMNEGFSMGQR 125
                   9****************************************************************99988665667665449*************** PP

                   XXXXXXXXXXXX CS
  HSF_DNA-bind  92 ellekikrkkse 103
                   +ll++ikr++s+
        349389 126 DLLKSIKRRTSS 137
                   *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-3425134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3025134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-4525134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-152952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.2E-2929134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-156779IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-158092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDPSSSSRAR SMPPPVPMEG LQEAGPSPFL TKTFEMVGDP NTNHIVSWNR GGISFVVWDP  60
HSFSATILPL YFKHNNFSSF VRQLNTYSWK NSTMPSASNY CERGFRKIEA ERWEFMNEGF  120
SMGQRDLLKS IKRRTSSSSP PTLNHYQPDG DDPSVELPQL QEERHVVMME ISTLRQEEQR  180
ARGYIQAMEQ RINGAEMKQR HMMSFLRRAV QDPSLLQQLF EQKKDQEEAT MFEQAGLVKT  240
EAVEHLSELE ALALEMQGYG RQRADGVERE LDDGFWEELL MNNDNSEEEE ANVKQDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-212413912125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap349389
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386480.0AL138648.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16M2.
GenBankAL1638180.0AL163818.1 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project).
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankJX1120280.0JX112028.1 Arabidopsis thaliana truncated heat shock factor A7b mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882121.10.0heat stress transcription factor A-7b
SwissprotQ9M1V50.0HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLD7LTQ20.0D7LTQ2_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_50027810.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-157HSF family protein