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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
348075 |
| Common Name | ARALYDRAFT_348075 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
bHLH |
| Protein Properties |
Length: 312aa MW: 34373.7 Da PI: 4.842 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 348075 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 22 | 3e-07 | 144 | 181 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
R++iN+++ +L++llP++ K + ++L +A++Y+k+Lq
348075 144 RRDINKKMRTLQDLLPNS-----HKDDNESVLDEAINYMKNLQ 181
789**************8.....69*****************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDLYEAEYNE DFMKSIIHGG GGGANKNLGD TQVVPQSHVV PPHETDMLES NRHVDGSTLI 60
ETLKASSSKR MMIDYDNRMK IKFIPPDEQS VVAERMVESG FNTSSAGFTE DSEGSMYLSS 120
SLDDESDDAR PQVPARTRKA LKQRRDINKK MRTLQDLLPN SHKDDNESVL DEAINYMKNL 180
QLQVQMMTMG NTFVTPSMML PFMGMQMGAQ QFLPAHVLGA GLPGINDSAD MLRFLNHPGL 240
IQMQKSAPFT PTEDCSPQSV PPSCAAFPNH IPNSTSLSNL DGASPYTRNQ GTLTDEGILP 300
GKNLETREQM K*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL138651 | 1e-145 | AL138651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T17J13. |
| GenBank | CP002686 | 1e-145 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
| GenBank | GQ477368 | 1e-145 | GQ477368.1 Arabidopsis thaliana phytochrome interacting factor 6 splice variant (PIF6) mRNA, complete cds, alternatively spliced. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Adams E,Diaz C,Hong JP,Shin R
14-3-3 proteins participate in light signaling through association with PHYTOCHROME INTERACTING FACTORs.
Int J Mol Sci, 2014. 15(12): p. 22801-14
[PMID:25501334] - Galvão VC,Collani S,Horrer D,Schmid M
Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana.
Plant J., 2015. 84(5): p. 949-62
[PMID:26466761] - Gomez EJ,Gerhardt K,Judd J,Tabor JJ,Suh J
Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery.
ACS Nano, 2016. 10(1): p. 225-37
[PMID:26618393] - Ochoa-Fernandez R, et al.
Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression.
Methods Mol. Biol., 2016. 1408: p. 125-39
[PMID:26965120] - Gangl R,Tenhaken R
Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark.
Front Plant Sci, 2016. 7: p. 1115
[PMID:27507985] - Paik I,Kathare PK,Kim JI,Huq E
Expanding Roles of PIFs in Signal Integration from Multiple Processes.
Mol Plant, 2017. 10(8): p. 1035-1046
[PMID:28711729]
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