PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

347836

Common Name

ARALYDRAFT_347836

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 536aa MW: 61369 Da PI: 5.9628

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
347836	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	86	7.3e-27	5	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknra............tksgyWkatgkd 89 lp+Gf+F P+de+++ +yLk ++g k+ l +v i+ v+iy+++P+ L +++ ++kew+ ++r+k + ++++r+ tk gyW+at 347836 5 LPQGFKFMPSDEQVIFCYLKSYLDGYKNVLLDVpIHLVNIYESNPRLLSVDFDKgNDKEWFIITERKKVDQGLSKTKRVgnggttrqkrgdTKGGYWHATVGA 107 799**********************9999999**********9544442778999999999988855656665566666666666******** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ + g vg k+ +++y +++ +ktdW+m ey+l 347836 108 HEINA--GDIVGYKTAFAYYVREQSADVKTDWLMLEYSL 144 99..889*******9999999********87 PP
2	NAM	86.4	5.5e-27	223	363	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknra............tksgyWkatgkd 89 lpp ++F P dee++ +yLk+ ++++k+ l +v i+ v+iy+++P+ L ++++ ++kew+ ++r+k + ++++r+ tk gyW+at 347836 223 LPPSYKFVPADEEVIFCYLKPYLDDNKNVLLNVpIHLVNIYESNPQLLSVEFDKgNDKEWFIITERKKVDQGLSKTKRVgnggttrqkrgdTKGGYWHATAGA 325 6999*********************9998999**********9555442778999999999988855656665566666666666******** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+++ g vg k+ +++y +++ ktdW+m ey+l 347836 326 QEIID-AGGIVGYKTAFAYYVREQSADFKTDWLMLEYSL 363 *.8889******88888999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-31	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	32.758	5	163	IPR003441	NAC domain
Pfam	PF02365	1.2E-13	6	144	IPR003441	NAC domain
SuperFamily	SSF101941	5.75E-34	216	381	IPR003441	NAC domain
PROSITE profile	PS51005	32.758	223	382	IPR003441	NAC domain
Pfam	PF02365	7.3E-14	224	363	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MAYILPQGFK FMPSDEQVIF CYLKSYLDGY KNVLLDVPIH LVNIYESNPR LLSVDFDKGN 60 DKEWFIITER KKVDQGLSKT KRVGNGGTTR QKRGDTKGGY WHATVGAHEI NAGDIVGYKT 120 AFAYYVREQS ADVKTDWLML EYSLYNTFHN NDKDYTLCKI YLTPQATKKK KEVEEQKKGQ 180 GVISVGERST PEPQKQPPSE NHSSSSFLSA DNLSPPSTIP YILPPSYKFV PADEEVIFCY 240 LKPYLDDNKN VLLNVPIHLV NIYESNPQLL SVEFDKGNDK EWFIITERKK VDQGLSKTKR 300 VGNGGTTRQK RGDTKGGYWH ATAGAQEIID AGGIVGYKTA FAYYVREQSA DFKTDWLMLE 360 YSLHHTCHNN DKDYTLCKIY PTPQATKKKE MEAQNKKQKK GEVAISVAHV EALEEHQPRN 420 VEFPQPHQSQ ALLDSYQHQP HDFAFQQPQF SQGPIDSQQP LPPLRLLDSL EGLVSFEIEY 480 QQEQQSHMMM MQDSRSGMAM TGWRNDESTQ EDLLDMLKDD RFFSMDELFN DVEEH*

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MAYILPQGFK FMPSDEQVIF CYLKSYLDGY KNVLLDVPIH LVNIYESNPR LLSVDFDKGN  60
DKEWFIITER KKVDQGLSKT KRVGNGGTTR QKRGDTKGGY WHATVGAHEI NAGDIVGYKT  120
AFAYYVREQS ADVKTDWLML EYSLYNTFHN NDKDYTLCKI YLTPQATKKK KEVEEQKKGQ  180
GVISVGERST PEPQKQPPSE NHSSSSFLSA DNLSPPSTIP YILPPSYKFV PADEEVIFCY  240
LKPYLDDNKN VLLNVPIHLV NIYESNPQLL SVEFDKGNDK EWFIITERKK VDQGLSKTKR  300
VGNGGTTRQK RGDTKGGYWH ATAGAQEIID AGGIVGYKTA FAYYVREQSA DFKTDWLMLE  360
YSLHHTCHNN DKDYTLCKIY PTPQATKKKE MEAQNKKQKK GEVAISVAHV EALEEHQPRN  420
VEFPQPHQSQ ALLDSYQHQP HDFAFQQPQF SQGPIDSQQP LPPLRLLDSL EGLVSFEIEY  480
QQEQQSHMMM MQDSRSGMAM TGWRNDESTQ EDLLDMLKDD RFFSMDELFN DVEEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-12	5	161	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-12	5	161	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-12	5	161	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-12	5	161	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-12	5	161	20	166	NAC domain-containing protein 19
3swm_B	2e-12	5	161	20	166	NAC domain-containing protein 19
3swm_C	2e-12	5	161	20	166	NAC domain-containing protein 19
3swm_D	2e-12	5	161	20	166	NAC domain-containing protein 19
3swp_A	2e-12	5	161	20	166	NAC domain-containing protein 19
3swp_B	2e-12	5	161	20	166	NAC domain-containing protein 19
3swp_C	2e-12	5	161	20	166	NAC domain-containing protein 19
3swp_D	2e-12	5	161	20	166	NAC domain-containing protein 19
4dul_A	1e-12	5	161	17	163	NAC domain-containing protein 19
4dul_B	1e-12	5	161	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	347836

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879737.1	0.0	uncharacterized protein LOC9313628 isoform X2
TrEMBL	D7LND4	0.0	D7LND4_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_5001228	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	1e-105	NAC domain containing protein 63

Link Out ? help Back to Top
Phytozome	347836
Entrez Gene	9313628