PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 346398
Common NameARALYDRAFT_346398
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BES1
Protein Properties Length: 678aa    MW: 75580.1 Da    PI: 6.4247
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
346398genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221617.7e-50642141143
  DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagssas..aspesslq. 95 
             ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+kp+  ++a aagssas  as+++s+  
  346398  64 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPaksQGTKPTggSSAVAAGSSAShiASQQTSTPa 166
             689******************************************************************9888999**9988888888888877889999888 PP

  DUF822  96 sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvl 143
             ++++ss  +spve +++++k + +p++s +d+ +++s++ + +v + +
  346398 167 LRVVSSGRRSPVELSACRMKGVFTPASSPYDKFPTQSPELVGSVNKAE 214
             ***********************************9985555544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.2E-4165199IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514459.65E-173241676IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.4E-186244676IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.7E-95250667IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-64281295IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-64302320IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-64324345IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060328336IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008423.5E-5407416IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.7E-64417439IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-64490509IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-64524540IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-64541552IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-64559582IPR001554Glycoside hydrolase, family 14
PRINTSPR008423.5E-5562572IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.7E-64599621IPR001554Glycoside hydrolase, family 14
PRINTSPR008423.5E-5650664IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008423.5E-5665677IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MATDMQKLLG TSEEDDDEEM DMDVKEEDDG DRRNRDTRAA SGSSNDEFMF QQSMQDQVGT  60
PGGGGSRRSR PLEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVIAALARE  120
AGWVVLPDGT TFPAKSQGTK PTGGSSAVAA GSSASHIASQ QTSTPALRVV SSGRRSPVEL  180
SACRMKGVFT PASSPYDKFP TQSPELVGSV NKAEGLVGCS VDVINSKQIL DIPPNLTEQD  240
FSGTPYVPVY VMLPLGVINM KCELADRDGL VKHLRILKSI HVDGVKVDCW WGIVEAHSPQ  300
EYNWTGYRQL FQMVRDLNLK IQVLMSFHEC GGNVGDDVCI PLPHWVAEIG RTNPDIYFTD  360
REGRRNPECL SWGIDKERIL RGRTALEVYF DYMRSFRIEL AEFLEDGVIS MVEIGLGPCG  420
ELRYPSCPIK HGWRYPGVGE FQCYDKYLSK SLRKAAESRG HLFWARGPDN TGSYNSQPQG  480
TGFFCDGGDY DGLYGRFFLK WYSQVLIDHA DQILSLAKLV FDSSCIAAKL PDVHWWYRTA  540
SHAAELTAGF YNPSNRDGYA AIASTLKKHG ATLSFVSGEV QVLNRPDDFS GALGEPEAVA  600
WQVLNAAWDS DTPVARENSL PCHDRVGYNK MLESVKFRND PDRRHLSSFA YSRLVPALME  660
EHNIVEFERF VKKLHGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-14224667711444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap346398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882038.10.0beta-amylase 7
RefseqXP_020883208.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLD7LD980.0D7LD98_ARALL; Beta-amylase
STRINGfgenesh1_pg.C_scaffold_40027400.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]