PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 345299
Common NameARALYDRAFT_345299
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 338aa    MW: 38195.2 Da    PI: 9.3955
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
345299genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.34.2e-1820115286
  trihelix   2 WtkqevlaLiearr.emeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 
               Wt +e+l+Liea++ ++e+r+rr++         ++ +W+++ +++++rg++r ++qC++kw+nl ++ykki+e e+ r  +s ++s+ + + +++
    345299  20 WTVSETLVLIEAKKmDDERRVRRSEkqpegrnkPAELRWKWIEEYCWRRGCQRDQNQCNDKWDNLMRDYKKIREYERLRveSSFNTSSSSSYWKMD 115
               ************9944444555543445555549999****************************************9953344556666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0851285IPR017877Myb-like domain
PfamPF138371.1E-1319116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MADPSSGEHM VMREYRKGNW TVSETLVLIE AKKMDDERRV RRSEKQPEGR NKPAELRWKW  60
IEEYCWRRGC QRDQNQCNDK WDNLMRDYKK IREYERLRVE SSFNTSSSSS YWKMDKSERK  120
EKNLPSNMLS QIYDALAELV GRKTLPSSSS AAVGNRNGSQ ILRVCQQSLG FVAPMMAQPM  180
HQTPTTIVLS YPPPPPQSLC LSLPSPPQLP PSSSFHVEPM QPTVDRSPGK RRKTTPGETT  240
AGGEREAEEV AIGAALSRCA SVITQVIRES EERQERRHKE VVKLQERRLK IEESKAEINR  300
QGISGLVDAI NQLATSILAL ASSSSCHNNH NHQGGPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap345299
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0060680.0AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879564.10.0uncharacterized protein LOC9315631 isoform X2
TrEMBLD7LII90.0D7LII9_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_40016410.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-150Trihelix family protein