PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

344050

Common Name

ARALYDRAFT_344050

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 544aa MW: 61826.7 Da PI: 8.3364

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
344050	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.2	7.2e-14	21	97	10	96
HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++ l +p f+ +h g++ +++t l++ s +W+vk+ ++++ l++GW++F a++L++gD+vvF+ +e+elv++v 344050 21 GFTNH-LDIPVAFFLKHlvGSN--KGTTAELRSdASEMTWRVKI--DGRR----LSNGWEDFTVAHDLRVGDIVVFR----QEGELVFHV 97 56666.9********98767..5557777765999***..9998....*********************....556667766 PP
2	B3	62.4	7.6e-20	152	244	3	97
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++++++lk++ +++pk fa ++ + ++++++l++e+g+sW++ l+ + + gr+++++GW++F+ ang k gD++ Fkl++ +e+++v+++f 344050 152 VATVTASNLKRDTVYIPKGFALSNHLM--NKFQIVLMNEEGESWKIDLRReTYSHGRFYMRRGWRSFCIANGKKPGDSFAFKLVE-NEETPVLQLF 244 567899*************999666..4578***********885666667************************98.5555888876 PP
3	B3	62.3	7.9e-20	278	366	4	95
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++++l+++rl+lpk+f+ ++g+ ++++++l++e+g+sW++ ++++ +sgr++ +GW++F+ ang k gD + Fkl + +e+++v++ 344050 278 ATVTASNLSRDRLYLPKTFIMSNGLL--KKFQMRLMNEEGESWTIDMKHEAHSGRFLTIRGWRSFCVANGKKPGDLFEFKLGQ-NEETPVLQ 366 567999***************998..4568********************999*******************977.55557665 PP
4	B3	42.3	1.3e-13	457	542	10	99
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + s+ l lp +f++ +g++k++ ++t+ d+ +W l ++k++ ++ l++G k+F++ ng+k ++++v++l++ +++ +++k+++k 344050 457 LTPSSKLNLPVEFIKGNGINKAG--KITMLDRYDAKWPTSLLMDKRG-TMSLGRGSKGFCEVNGVKMNESFVLELIW-EDTVPLLKFCSK 542 55567799********99887..7***********766665.678************************.788899999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.5E-20	8	105	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.33E-19	9	109	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.209	11	103	IPR003340	B3 DNA binding domain
CDD	cd10017	7.41E-14	12	98	No hit	No description
SMART	SM01019	2.9E-21	14	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-8	24	97	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.3E-20	149	241	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.86E-17	150	245	No hit	No description
PROSITE profile	PS50863	15.453	150	247	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.14E-20	150	246	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.3E-19	151	244	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-29	151	247	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	9.5E-20	270	365	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.44E-20	270	365	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.72E-17	275	367	No hit	No description
PROSITE profile	PS50863	13.972	275	371	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-29	276	371	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-18	278	367	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.5E-16	445	542	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-16	447	541	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.206	448	542	IPR003340	B3 DNA binding domain
CDD	cd10017	2.22E-10	451	541	No hit	No description
SMART	SM01019	1.0E-22	452	543	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-12	457	542	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MADPPLYSPI NPHFFQPLLP GFTNHLDIPV AFFLKHLVGS NKGTTAELRS DASEMTWRVK 60 IDGRRLSNGW EDFTVAHDLR VGDIVVFRQE GELVFHVSAL GPSCCEIQYR DNYPEEDKIE 120 KLCDTEKVSR KKNSLKREAD SAPEHSLGSC FVATVTASNL KRDTVYIPKG FALSNHLMNK 180 FQIVLMNEEG ESWKIDLRRE TYSHGRFYMR RGWRSFCIAN GKKPGDSFAF KLVENEETPV 240 LQLFPMTIED LDKLQSVPRE KSRKVEAPPS PDPSSFVATV TASNLSRDRL YLPKTFIMSN 300 GLLKKFQMRL MNEEGESWTI DMKHEAHSGR FLTIRGWRSF CVANGKKPGD LFEFKLGQNE 360 ETPVLQLVPL NSEDLHKLEP NNDTRQGKCL EATKKEFLCL QATKKKFLGE EVYRNDSFKA 420 IDEDIRKGQC SKAIKQEYVS TEENNSTSQN RFVTLTLTPS SKLNLPVEFI KGNGINKAGK 480 ITMLDRYDAK WPTSLLMDKR GTMSLGRGSK GFCEVNGVKM NESFVLELIW EDTVPLLKFC 540 SKV*

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MADPPLYSPI NPHFFQPLLP GFTNHLDIPV AFFLKHLVGS NKGTTAELRS DASEMTWRVK  60
IDGRRLSNGW EDFTVAHDLR VGDIVVFRQE GELVFHVSAL GPSCCEIQYR DNYPEEDKIE  120
KLCDTEKVSR KKNSLKREAD SAPEHSLGSC FVATVTASNL KRDTVYIPKG FALSNHLMNK  180
FQIVLMNEEG ESWKIDLRRE TYSHGRFYMR RGWRSFCIAN GKKPGDSFAF KLVENEETPV  240
LQLFPMTIED LDKLQSVPRE KSRKVEAPPS PDPSSFVATV TASNLSRDRL YLPKTFIMSN  300
GLLKKFQMRL MNEEGESWTI DMKHEAHSGR FLTIRGWRSF CVANGKKPGD LFEFKLGQNE  360
ETPVLQLVPL NSEDLHKLEP NNDTRQGKCL EATKKEFLCL QATKKKFLGE EVYRNDSFKA  420
IDEDIRKGQC SKAIKQEYVS TEENNSTSQN RFVTLTLTPS SKLNLPVEFI KGNGINKAGK  480
ITMLDRYDAK WPTSLLMDKR GTMSLGRGSK GFCEVNGVKM NESFVLELIW EDTVPLLKFC  540
SKV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	344050

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007266	1e-112	AC007266.5 Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence.
GenBank	CP002685	1e-112	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880610.1	0.0	B3 domain-containing protein REM10 isoform X3
Swissprot	P0DH85	0.0	REM10_ARATH; B3 domain-containing protein REM10
TrEMBL	D7LIC1	0.0	D7LIC1_ARALL; Transcriptional factor B3 family protein
STRING	fgenesh1_pg.C_scaffold_4000392	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14490	15	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	0.0	B3 family protein

Link Out ? help Back to Top
Phytozome	344050
Entrez Gene	9316677

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]