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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
344010 |
Common Name | ARALYDRAFT_344010 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
NAC |
Protein Properties |
Length: 320aa MW: 36026.2 Da PI: 8.8798 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
344010 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 177.8 | 3e-55 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102
lppGfrFhPtdeel+++yL +k+++++++ ++i++vd++k+ePw+Lp+k+k + kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++elvg+
344010 16 LPPGFRFHPTDEELISYYLVNKIADQNFTG-KAIADVDLNKSEPWELPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNStTSELVGM 117
79*************************999.88***************99999****************************************9878889*** PP
NAM 103 kktLvfykgrapkgektdWvmheyrl 128
kktLvfy+grap+gekt+Wvmheyrl
344010 118 KKTLVFYRGRAPRGEKTSWVMHEYRL 143
************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MEQGDHQQQK KEEEALPPGF RFHPTDEELI SYYLVNKIAD QNFTGKAIAD VDLNKSEPWE 60 LPEKAKMGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT GKDKEIFNST TSELVGMKKT 120 LVFYRGRAPR GEKTSWVMHE YRLHSKSSYR TSKQDEWVVC RVFKKTEATK KYISSSSSST 180 SHHNHNHNHT RASILSSTNN NNTNYSSDLL QLPPHLQPHP SLNINQSLMA NAVHLAELSR 240 VFRASTSTNM DSAHQQLMNY THMPVSGLSL NLGGALVQPP PVVSLEDVAA VSASFNGGNG 300 FGNVEMSQCM DLDGYWPSY*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-58 | 15 | 171 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-58 | 15 | 171 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-58 | 15 | 171 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-58 | 15 | 171 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-58 | 15 | 171 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-58 | 15 | 171 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-58 | 15 | 171 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-58 | 15 | 171 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-58 | 15 | 171 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-58 | 15 | 171 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-58 | 15 | 171 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-58 | 15 | 171 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-58 | 15 | 171 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-58 | 15 | 171 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC006403 | 0.0 | AC006403.4 Arabidopsis thaliana chromosome 2 clone T28I24 map mi238, complete sequence. |
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Vidal EA,Álvarez JM,Gutiérrez RA
Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] - Lee MH,Jeon HS,Kim HG,Park OK
An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]
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