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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 34350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 29859.2 Da PI: 9.075 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 5 | 24 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+C Cgk +s+L++H+ 34350 5 YECRECGKKLGKPSLLRQHL 24 99*****************7 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0016 | 33 | 58 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cg ++ +LkrHi+ H 34350 33 FCCPvdSCGAKYKWENHLKRHINDkH 58 679999****************9766 PP | |||||||
3 | zf-C2H2 | 15.9 | 3.7e-05 | 107 | 132 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C+ +Cgk F+ +s+L+ H t H 34350 107 HACKeeKCGKAFRYPSQLRYHEETcH 132 579999***************99955 PP | |||||||
4 | zf-C2H2 | 15.4 | 5.4e-05 | 140 | 164 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C+ C+++F ++s+L H r+ H 34350 140 VCSepGCNERFDHPSDLSEHTRNaH 164 688889****************988 PP | |||||||
5 | zf-C2H2 | 12.5 | 0.00046 | 200 | 224 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kCp dC+ ++ + nL++Hi++ H 34350 200 KCPypDCPLTYLQENNLRKHIKVaH 224 79999*****************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.9E-6 | 2 | 25 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.4E-8 | 3 | 54 | No hit | No description |
SMART | SM00355 | 0.13 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.57 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-7 | 26 | 55 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.031 | 33 | 58 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 33 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 58 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.9 | 63 | 87 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.04E-5 | 104 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 105 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.263 | 107 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.2 | 107 | 132 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 109 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 139 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.016 | 139 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.4E-5 | 140 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 141 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 19 | 167 | 188 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.3E-5 | 178 | 222 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.61E-6 | 179 | 241 | No hit | No description |
SMART | SM00355 | 0.037 | 199 | 224 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.681 | 199 | 229 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 201 | 224 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 224 | 252 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 180 | 230 | 252 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 230 | 253 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
EEKKYECREC GKKLGKPSLL RQHLLCHSNE RKFCCPVDSC GAKYKWENHL KRHINDKHDG 60 KVHACSRPGC IFTTRILHDL KRHTKLHEKK GTLQRHRDKG LEEAKEHACK EEKCGKAFRY 120 PSQLRYHEET CHGEIYVDIV CSEPGCNERF DHPSDLSEHT RNAHKYVFCE VCGKQCMRSK 180 IKRHYATHDK AGLLNRERIK CPYPDCPLTY LQENNLRKHI KVAHLKFRPY PCSNPECGKS 240 FAYRHVRDNH ERS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU924184 | 1e-175 | Selaginella moellendorffii transcription factor IIIA gene, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024523610.1 | 0.0 | transcription factor IIIA | ||||
TrEMBL | B6DCI8 | 0.0 | B6DCI8_SELML; Transcription factor IIIA | ||||
STRING | EFJ19661 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2981 | 16 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-33 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | 34350 |
Publications ? help Back to Top | |||
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