PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 343397 | ||||||||
Common Name | ARALYDRAFT_343397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 227aa MW: 25031.9 Da PI: 6.2416 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.4 | 3.2e-13 | 120 | 177 | 4 | 59 |
XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++r +r++kNRe+A rsR+RK++ ++ eLe +++ L++eN +Lk + ++ + +++l 343397 120 DRRYKRMIKNRESAARSRARKQEcaYTNELELEIAHLQTENARLKIQQDQTSSSSSQL 177 7899******************5559*******************9988887777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-12 | 111 | 177 | No hit | No description |
SMART | SM00338 | 1.7E-11 | 117 | 183 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-11 | 120 | 177 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.78E-10 | 121 | 179 | No hit | No description |
CDD | cd14707 | 2.23E-23 | 121 | 164 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 124 | 139 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEEVWKEINN GSLHYHRQLN IGHEPMLKNQ NPNNSTFQDF LNMPLNQQPP STSSIVTALY 60 GSLPLPPPAT VLSLNSGVGF EFLDTTETLA ASNPHSFEES ARVGCLGKKR SQDPDESRGD 120 RRYKRMIKNR ESAARSRARK QECAYTNELE LEIAHLQTEN ARLKIQQDQT SSSSSQLISA 180 LFVGEMTESK VVVPDVCDGY SISASTPSMS NVGQVSSFNQ HLSVCV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 343397 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ177137 | 0.0 | GQ177137.1 Arabidopsis thaliana ecotype Ws-0 FDP gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889546.1 | 1e-125 | bZIP transcription factor 27 isoform X2 | ||||
Swissprot | Q7PCC6 | 1e-104 | FDP_ARATH; bZIP transcription factor 27 | ||||
TrEMBL | D7LAA9 | 1e-168 | D7LAA9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_3003160 | 1e-168 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 1e-103 | basic region/leucine zipper motif 27 |
Link Out ? help Back to Top | |
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Phytozome | 343397 |
Entrez Gene | 9320149 |
Publications ? help Back to Top | |||
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