PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 342995
Common NameARALYDRAFT_342995
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 325aa    MW: 36685.4 Da    PI: 7.2
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
342995genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.7e-11162214557
             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
             k+ rr  kNReAA rs qRK+++i  Le  v  Le+ N++  ++++ l++   
  342995 162 KKVRRILKNREAAARSKQRKLQYIIDLEYSVNFLEKRNTSIYEKIKLLENDKT 214
             889999******************************************99755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077161.2E-13158211IPR004827Basic-leucine zipper domain
SMARTSM003382.0E-14158222IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.14160223IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-11162217No hitNo description
Gene3DG3DSA:1.20.5.1705.8E-13162216No hitNo description
CDDcd147031.62E-14163214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNGSDNITPS GPKLMTLPSP VFSSMPPSHD YSSLPPLSPS PSSFRRNSLP SMSLSPSSHV  60
ENRDSSIRAN KKNHSLPPLG VKRRAAKDIE PLRRHNRSVS LDSCFSDLPK LPPSPGNVSS  120
SSSVDGDENA SDLEFGSSDY TDDELNKIAE SPKLQEVKSD PKKVRRILKN REAAARSKQR  180
KLQYIIDLEY SVNFLEKRNT SIYEKIKLLE NDKTMMMNEK KEITIRIESM EQQAQLRDAL  240
TEQLQAEIER LHAVTISNEK GNVEAQRLKE IPCLNKKMSA DVDQMLEMET CEVLQNHREF  300
DRLNMQPMDP SMFNWSHPNP GFYG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182ARSKQRKLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap342995
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883791.10.0transcription factor VIP1
TrEMBLD7L0110.0D7L011_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30027580.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1932736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G12940.11e-103bZIP family protein