PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 342085
Common NameARALYDRAFT_342085
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 271aa    MW: 29073.5 Da    PI: 5.9624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
342085genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.1e-051541941055
             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             + R +r+ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  342085 154 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 194
             668889999*********999.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.877144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-11147205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-7152200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-4152198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGDTAEDQND RAMMEAEGVT SFSELLMFSD GVLSSSSDHQ REGNVGDRGE DSLGFVFSGK  60
TGSRMLCFSG GYQNDDESLF LEPSVPSLGV SVLDPSCIKI DSKNSNDACT VDKSPKSSNK  120
KRTGTGNGQE PDQNRKPDKK CKRNQDKSSV GIAKVRKERL GERIAALQQL VSPYGKTDAA  180
SVLHEAMGYI KFLQDQIQVL CSPYLINHSL DGGVVTGDVM AAMKAKDLRS RGLCLVPVSS  240
TVHVENSNGA DFWSPVTMGH TTSQSLPHGF *
Cis-element ? help Back to Top
SourceLink
PlantRegMap342085
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0845200.0AY084520.1 Arabidopsis thaliana clone 110428 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885311.10.0transcription factor bHLH113 isoform X1
SwissprotQ9LT670.0BH113_ARATH; Transcription factor bHLH113
TrEMBLD7L9Z70.0D7L9Z7_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30018480.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]