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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 341554 | ||||||||
Common Name | ARALYDRAFT_341554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 230aa MW: 25634.3 Da PI: 8.8273 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 34 | 7.5e-11 | 53 | 122 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekk 70 W+++ + Li+a e+ +l+rg+lk+++W+ev++ + r+ + ++ + Ck++++ ++k++k +k+ 341554 53 WSEEATEILINAWGERYLELKRGNLKQQHWKEVAEIVnRDNKSPKTDIHCKNRIDTVKKKFKLEKAKIAA 122 *************************************788899*******************99987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.6E-18 | 51 | 120 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEEDDETQSR PSPTDTSTAK SPGRSGLALV VSCPNQAASG RRSGGGGGRD DSWSEEATEI 60 LINAWGERYL ELKRGNLKQQ HWKEVAEIVN RDNKSPKTDI HCKNRIDTVK KKFKLEKAKI 120 AAGKELLLRR SQSLNLNFLL TLPLPPLLLP TPVTLDKTGG GGGREVGEVA MAIVGFAESY 180 EKVETLKLKQ MVELEKEKMK FSKELELQRI HFFKAQLEML RNCLEDRDS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 341554 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013727919.1 | 2e-47 | trihelix transcription factor ASIL1-like | ||||
Swissprot | Q9LJG8 | 3e-35 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | D7L2D5 | 1e-167 | D7L2D5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_3001317 | 1e-168 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6262 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54060.1 | 2e-26 | 6B-interacting protein 1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | 341554 |
Entrez Gene | 9318938 |