PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 341554
Common NameARALYDRAFT_341554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 230aa    MW: 25634.3 Da    PI: 8.8273
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
341554genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix347.5e-1153122270
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekk 70 
               W+++ +  Li+a  e+  +l+rg+lk+++W+ev++ + r+ +  ++ + Ck++++ ++k++k +k+    
    341554  53 WSEEATEILINAWGERYLELKRGNLKQQHWKEVAEIVnRDNKSPKTDIHCKNRIDTVKKKFKLEKAKIAA 122
               *************************************788899*******************99987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-1851120No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEEDDETQSR PSPTDTSTAK SPGRSGLALV VSCPNQAASG RRSGGGGGRD DSWSEEATEI  60
LINAWGERYL ELKRGNLKQQ HWKEVAEIVN RDNKSPKTDI HCKNRIDTVK KKFKLEKAKI  120
AAGKELLLRR SQSLNLNFLL TLPLPPLLLP TPVTLDKTGG GGGREVGEVA MAIVGFAESY  180
EKVETLKLKQ MVELEKEKMK FSKELELQRI HFFKAQLEML RNCLEDRDS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap341554
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727919.12e-47trihelix transcription factor ASIL1-like
SwissprotQ9LJG83e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLD7L2D51e-167D7L2D5_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30013171e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.12e-266B-interacting protein 1-like 1