PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 286aa MW: 32496.2 Da PI: 6.1782

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
341194	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	94	138	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++d+ +++G+g+Wk+Iar+ k+R++ q+ s+ qky 341194 94 AWSPNEHKLFLDGLNKYGKGDWKSIARECVKTRSPMQVASHAQKY 138 6*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.3	3	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.94E-6	6	60	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.215	87	143	IPR017930	Myb domain
SuperFamily	SSF46689	2.62E-16	88	144	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-10	89	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-15	90	142	IPR006447	Myb domain, plants
SMART	SM00717	1.9E-8	91	141	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-11	94	138	IPR001005	SANT/Myb domain
CDD	cd00167	2.67E-10	94	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDEIPLWTRV DDKRFESALV QFPEGSPYFL ENIAQFLQKP LKDVKYYYQA LVDDVALIES 60 GNFALPNYRD DDYVSLKEAT KSKNQGTGKK KGIAWSPNEH KLFLDGLNKY GKGDWKSIAR 120 ECVKTRSPMQ VASHAQKYFL RKNKKGKRMS IHDMPLGDAD NVTVPVSHLN STGQQPQFGD 180 QILPDHYYHC SQDNVTNIPG SNLVFMGQQP HFGGQIPPNQ SHPYSRDNVT VPESNLKPMG 240 EQPHFGDHIS PDQYDRDFLD NFGFFYDDGE DDGSLASFEK LYYKA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00344	DAP	Transfer from AT3G10580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	341194

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011560	1e-157	AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBank	ATAC013428	1e-157	AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBank	CP002686	1e-157	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884799.1	0.0	transcription factor DIVARICATA
Swissprot	Q9FNN6	8e-34	SRM1_ARATH; Transcription factor SRM1
TrEMBL	D7L911	0.0	D7L911_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_3000957	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14731	7	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10580.1	1e-141	MYB_related family protein

Link Out ? help Back to Top
Phytozome	341194
Entrez Gene	9318753

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]