PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 340623
Common NameARALYDRAFT_340623
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 464aa    MW: 53013.4 Da    PI: 4.9469
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
340623genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.44.2e-3041342128
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
              pGfrF+Ptdeel+++yLk+k+ g++  ++++i e++i++++P+++   +++k++++ +yfF++++ k++t +++n + k  yWk++g+ k + +++g+++g 
  340623   4 KPGFRFQPTDEELINYYLKNKIMGNTWLVDDTICEINILNHHPSSFSslSRIKSNDSIYYFFVPKQYKTETVRKRNTKEKYWYWKHSGRVKVIEDESGNKIGE 106
             59************************999999**************8444888888888999999888777655555666778******************** PP

     NAM 103 kktLvfykg..rapkgektdWvmheyrl 128
             ++ + + k    + kg+k++Wvmhey++
  340623 107 RQGFLYQKYgdPKTKGNKSRWVMHEYKI 134
             ******85322778899*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.3493153IPR003441NAC domain
SuperFamilySSF1019411.44E-344153IPR003441NAC domain
PfamPF023651.2E-205134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEQKPGFRFQ PTDEELINYY LKNKIMGNTW LVDDTICEIN ILNHHPSSFS SLSRIKSNDS  60
IYYFFVPKQY KTETVRKRNT KEKYWYWKHS GRVKVIEDES GNKIGERQGF LYQKYGDPKT  120
KGNKSRWVMH EYKITSLPHH NLDSYVICKI FDKGKEADIQ NGNSLSVASQ SLVSDLNTIS  180
VSTSILPEVE QPGQESLTPY LAQEDDEFLR GLPPAYRGTA QHFLSDQEMQ EMYIDSRPKD  240
SVRAINTEPE IEQPGQENVH DLGVPMNEQE DLFPRNAFDP RNDEYWSGLL SYNGGNFEDV  300
FPDQEFIMQE NRNDYRPKIS LSGIIVDYSS DSDSYAESMS ATSYKGTSSP IDTVGSSNRH  360
FLKTCGDEIL SLSKDIQISD EPSISRKTRE SQLAQCTISS KLEFLSCSYV KQGMVKTEKK  420
GLLITEEAIE RKRENPPYIS LINMIIGFII LLALIGDIIS VYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-17515719169NO APICAL MERISTEM PROTEIN
1ut4_B8e-17515719169NO APICAL MERISTEM PROTEIN
1ut7_A8e-17515719169NO APICAL MERISTEM PROTEIN
1ut7_B8e-17515719169NO APICAL MERISTEM PROTEIN
3swm_A8e-17515722172NAC domain-containing protein 19
3swm_B8e-17515722172NAC domain-containing protein 19
3swm_C8e-17515722172NAC domain-containing protein 19
3swm_D8e-17515722172NAC domain-containing protein 19
3swp_A8e-17515722172NAC domain-containing protein 19
3swp_B8e-17515722172NAC domain-containing protein 19
3swp_C8e-17515722172NAC domain-containing protein 19
3swp_D8e-17515722172NAC domain-containing protein 19
4dul_A8e-17515719169NAC domain-containing protein 19
4dul_B8e-17515719169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap340623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888963.10.0NAC domain-containing protein 69
TrEMBLD7L2X40.0D7L2X4_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30003860.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.18e-89NAC domain containing protein 69