PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

339216

Common Name

ARALYDRAFT_339216, WRKY36

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WRKY

Protein Properties

Length: 383aa MW: 42938.7 Da PI: 6.7312

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
339216	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	85.5	4.8e-27	198	257	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa.edpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ e+++++ +tYeg+H+h+ 339216 198 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCGeEETSAFMTTYEGNHDHP 257 8*************************99******96157889*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-28	182	259	IPR003657	WRKY domain
PROSITE profile	PS50811	24.202	192	259	IPR003657	WRKY domain
SuperFamily	SSF118290	8.37E-24	193	259	IPR003657	WRKY domain
SMART	SM00774	2.4E-32	197	258	IPR003657	WRKY domain
Pfam	PF03106	6.6E-25	198	257	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MIKEETISCF NPFDGVMAES DKEEELDVTK AKVEKVREEN EKLKLLLSTI LNNYNSLQMH 60 VSNVLREQQR ASMELDQDKY NDFDVDISLR LGRSEQKISK KEEKVDKISN ENKEESKDKR 120 SALGLGFQIQ SYEALKLDDL CRQVKNANAE NKCLSSRKDV KTVRNENHHQ DVLEEHGQAG 180 LKKTRVCVKA SCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP VRKQVQRCGE 240 EETSAFMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGS SSSSSSTSAS LSYFFPFHHF 300 SISTTNSHPT VTLDLTRPNY PNQLPDDYPL SSSSFSLNFS SPDPPPQSSH DNTLNFSGLR 360 TQAPLSTDSL LARYRTRLSG QQ*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MIKEETISCF NPFDGVMAES DKEEELDVTK AKVEKVREEN EKLKLLLSTI LNNYNSLQMH  60
VSNVLREQQR ASMELDQDKY NDFDVDISLR LGRSEQKISK KEEKVDKISN ENKEESKDKR  120
SALGLGFQIQ SYEALKLDDL CRQVKNANAE NKCLSSRKDV KTVRNENHHQ DVLEEHGQAG  180
LKKTRVCVKA SCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP VRKQVQRCGE  240
EETSAFMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGS SSSSSSTSAS LSYFFPFHHF  300
SISTTNSHPT VTLDLTRPNY PNQLPDDYPL SSSSFSLNFS SPDPPPQSSH DNTLNFSGLR  360
TQAPLSTDSL LARYRTRLSG QQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-18	184	259	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	339216

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493530	0.0	AB493530.1 Arabidopsis thaliana At1g69810 mRNA for hypothetical protein, partial cds, clone: RAAt1g69810.
GenBank	BT029234	0.0	BT029234.1 Arabidopsis thaliana At1g69810 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888739.1	0.0	probable WRKY transcription factor 36
Swissprot	Q9CAR4	0.0	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	D7KXJ9	0.0	D7KXJ9_ARALL; WRKY DNA-binding protein 36
STRING	fgenesh1_pg.C_scaffold_2001315	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	0.0	WRKY DNA-binding protein 36

Link Out ? help Back to Top
Phytozome	339216
Entrez Gene	9324802

Publications ? help Back to Top
Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]