PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 338071
Common NameARALYDRAFT_338071
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 692aa    MW: 77163.6 Da    PI: 7.1029
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
338071genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.94.8e-1323046841374
    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
             lv+lL+ c ea++s++ +++++++ar  +lasp+g +pm+Rl+ay+ eALa r+ar++++++++ pp+e +++ ++e+ +al+++++v+Pi+kf h+taN+++
  338071 304 LVNLLTGCLEAIRSRNIAAINHFIARTGDLASPRGrTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFIHFTANEML 406
             6899*******************************99***********************************99***************************** PP

    GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
             l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p+++RiTg+g+    sk el+etg+rL+ fAe+++++fef++ v++rled++l++L+vk+gE++aVn
  338071 407 LRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRSNPPHHVRITGIGE----SKLELNETGDRLHGFAEAMNLQFEFHP-VVDRLEDVRLWMLHVKEGESVAVN 504
             ***********************************************....***************************.7*********************** PP

    GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
             +v+q+h++l + +  +   +++L l++s++P  +v++eqea+hnse++ +r++++l+yysa+fd+++++l+++s  r+k+E++l+grei+n+vaceg++r+er
  338071 505 CVMQMHKTLYDGTGAAI--RDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLRYYSAMFDAIHTNLATDSLIRVKIEEMLFGREIRNIVACEGNHRQER 605
             *********88777777..99********************************************************************************** PP

    GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee..........sgslvlgWkdrpLvsvSaWr 374
             h  +++W+++le+ GF+++ +se++++q k+llr+++  ++g ++ve +           g ++l W+++pL+++SaW+
  338071 606 HVGFRHWKRMLEQLGFRSLGVSEREVMQSKMLLRMYGsdNEGfFNVERSgedgggeggrGGGVTLRWSEQPLYTISAWT 684
             *************************************644559999966666888888677888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.849278651IPR005202Transcription factor GRAS
PfamPF035141.6E-129304684IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MENRNGEPGL QQLSSLFIQQ LRGRSSVVSV RDDRMLAGCS SSSLLSPTRR LRSEAVAATS  60
ATVSAHFPMN TQRLDLPCSS SFSRKETPSN RPLGRSISLD NSNKPVERKT SGCSLKQNIK  120
LPPLATTRGN GEGFSWNNDN NNNRGKSLKR LAEEDESCLS RAKRTKCENE GGFWFEHFTG  180
HDSSSPALPF SLTCSGDDEE KVCFVPSEVI SQPLPNWVDS VITELAGIGD KDVESSLPAA  240
VKETSGSSTS ASSESRSLSH RVPEPTNGSR NPYTHRGATE ERTSGNIINN NNNHRNDLQR  300
DFELVNLLTG CLEAIRSRNI AAINHFIART GDLASPRGRT PMTRLIAYYI EALALRVARM  360
WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID  420
FDIKQGLQWP SFFQSLASRS NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP  480
VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS TNPIALVLAE  540
QEAEHNSEQL ETRVCNSLRY YSAMFDAIHT NLATDSLIRV KIEEMLFGRE IRNIVACEGN  600
HRQERHVGFR HWKRMLEQLG FRSLGVSERE VMQSKMLLRM YGSDNEGFFN VERSGEDGGG  660
EGGRGGGVTL RWSEQPLYTI SAWTIGGIGG N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6331168425378Protein SCARECROW
5b3h_D7e-6331168425378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap338071
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176498.10.0GRAS family transcription factor
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLD7KU230.0D7KU23_ARALL; Scarecrow transcription factor family protein
STRINGfgenesh1_pg.C_scaffold_20001700.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein