PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 337643
Common NameARALYDRAFT_337643
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 496aa    MW: 55247.5 Da    PI: 4.0744
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
337643genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31325382259
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             +Dgy+WrKYGqK+vkg+++prsYY+Ct ++C+vkk+ver a+++k+v++tY g Hnh+
  337643 325 NDGYRWRKYGQKVVKGNPNPRSYYKCTNNECKVKKHVERGADNNKLVVTTYDGIHNHP 382
             7********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-31309384IPR003657WRKY domain
PROSITE profilePS5081132.019319384IPR003657WRKY domain
SuperFamilySSF1182901.31E-26319384IPR003657WRKY domain
SMARTSM007746.3E-35324383IPR003657WRKY domain
PfamPF031063.2E-24325382IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSDFDGNFIE MTSYWAPPSS PSPRTILAML EQTDNGMNPI SEIFPQTNIP RDHDTDQSGQ  60
RSGLRERLAA RIGFSLPTLD TENMSPLDAF FRSSTVPNSP VVAISPGFSP SALLQSPNTV  120
SDSSQIIPPS PATNYGPPEM VETSGEDNAM TMVFNNDLPY QPYNVDLPPL EVFDDIPTEE  180
SFYIPSYEPD VDPIGTPLVA SFESELSDVD PIGTPLVASF ESELGDDAHI DIISIEDSES  240
ENENKDEDDE DYQFDYEDED QGQDQDVYLD EEEEEDEDNV ALDDAQPSSR KRRRFDQASN  300
NIGATRTSKT QRVILQMETD EDNPNDGYRW RKYGQKVVKG NPNPRSYYKC TNNECKVKKH  360
VERGADNNKL VVTTYDGIHN HPSPPARRSN TGSRNRSAGT TMSQNQVDQT SRLARAPPPS  420
SRTPVEMRPF SSMAPQVDLT QVYTTGISKL PNVPVYQNPG FMYRTDEPMM NVMPDGADVY  480
GGIMHRLFVK FGVDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-23315384877Probable WRKY transcription factor 4
2ayd_A1e-23312386276WRKY transcription factor 1
2lex_A1e-23315384877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289293RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap337643
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0718510.0AY071851.1 Arabidopsis thaliana WRKY transcription factor 10 (WRKY10) mRNA, complete cds.
GenBankDQ4463620.0DQ446362.1 Arabidopsis thaliana clone pENTR221-At1g55600 WRKY family transcription factor (At1g55600) mRNA, complete cds.
GenBankDQ6528990.0DQ652899.1 Arabidopsis thaliana clone 0000019246_0000013269 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894513.10.0probable WRKY transcription factor 10
SwissprotQ9LG050.0WRK10_ARATH; Probable WRKY transcription factor 10
TrEMBLD7KMZ80.0D7KMZ8_ARALL; WRKY10
STRINGfgenesh1_pg.C_scaffold_10042080.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.11e-124WRKY DNA-binding protein 10
Publications ? help Back to Top
  1. Li J,Nie X,Tan JL,Berger F
    Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(38): p. 15479-84
    [PMID:24003120]
  2. Fatihi A,Zbierzak AM,Dörmann P
    Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds.
    Plant Physiol., 2013. 163(2): p. 973-85
    [PMID:24014578]
  3. Liu P, et al.
    Arabidopsis RAN1 mediates seed development through its parental ratio by affecting the onset of endosperm cellularization.
    Mol Plant, 2014. 7(8): p. 1316-1328
    [PMID:24719465]
  4. Xiao YG,Sun QB,Kang XJ,Chen CB,Ni M
    SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development.
    New Phytol., 2016. 209(2): p. 636-49
    [PMID:26389843]
  5. Meng LS,Wang YB,Loake GJ,Jiang JH
    Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2016. 7: p. 1645
    [PMID:27857719]
  6. Meng LS,Wang YB,Loake GJ,Jiang JH
    Corrigendum: Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2017. 8: p. 1073
    [PMID:28616014]