 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 337099 | ||||||||
| Common Name | ARALYDRAFT_337099 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
| Family | C3H | ||||||||
| Protein Properties | Length: 1164aa MW: 134370 Da PI: 6.9069 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 22 | 2.9e-07 | 434 | 452 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS
zf-CCCH 6 CrffartGtCkyGdrCkFaH 25
C +f G+C+yG++CkF+H
337099 434 CIYFNS-GYCRYGNSCKFSH 452
885555.************* PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50815 | 20.11 | 33 | 241 | IPR003511 | HORMA domain |
| SuperFamily | SSF56019 | 2.62E-18 | 43 | 213 | IPR003511 | HORMA domain |
| Pfam | PF02301 | 2.6E-35 | 68 | 234 | IPR003511 | HORMA domain |
| PROSITE profile | PS50103 | 13.479 | 428 | 455 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.008 | 429 | 454 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 434 | 453 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.0E-5 | 434 | 452 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:3.90.70.10 | 4.4E-7 | 549 | 747 | No hit | No description |
| SuperFamily | SSF54001 | 2.11E-10 | 551 | 748 | No hit | No description |
| CDD | cd02619 | 4.24E-17 | 557 | 751 | No hit | No description |
| SuperFamily | SSF52374 | 2.66E-31 | 868 | 1001 | No hit | No description |
| Gene3D | G3DSA:3.40.50.620 | 5.6E-33 | 890 | 967 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| Pfam | PF00133 | 6.2E-36 | 892 | 1007 | IPR002300 | Aminoacyl-tRNA synthetase, class Ia |
| Gene3D | G3DSA:1.10.730.10 | 1.4E-18 | 968 | 1092 | IPR009080 | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation | ||||
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity | ||||
| GO:0005524 | Molecular Function | ATP binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1164 aa Download sequence Send to blast |
MVSRRRRPSS FSSPRFFSLS SSSLKSYLVF LPQVAVQNLK EAEITEQDSL LLTKDLLRIA 60 KLNIRVLFHE NDALDMKIKT LRQVDTEPRR LIDWNWMEKG VNDALQRKYL KTLVFCIRDG 120 PMIEEYSFSF SYSDSGSQHV TMNVNRNGNK KHEGTPNQMS TSACKMVPTL VQLLRTLDKT 180 PDERTIVMKL LYYDDVMPPD YEPPFFRSCT EEESNYVWTK DPMIMEVGII YRKHLVLALT 240 VKSLLDPSED ENDDMQEHGK STKPDCVHDN QPSDTDTDSE VERVFLFSSD VYLIYTSNVH 300 YKKQADANNG EVDEDATQNP LENEQQLARV KNSRQLDTLE LTDILSYFQD TSLVLSEDFM 360 DQLEKEGVLS KTGEDTYIRN RDKAASLRIA GGPRIPKVQR QYLKREVNVL GSSRDVDFSR 420 PRPRKDRGRQ NVQCIYFNSG YCRYGNSCKF SHRISGEEKT SSVATIMKIP ERKRILSELP 480 EKIKKDMESV NISEKYAKTC LGEKRYGFIK ETKRIGSLKV SDDKKFIVIY WMTQGVLEVF 540 LLDEETRERL KDASGYIRDQ GTHDLCWTYV SSDMVSASRK LHGWDLKYTP LCTRYLCQNL 600 DPEDYRGSLK RCDEDGGGHR CYENDVESTL AYIQKFGIPE EEEGKEVFVC RDRRVLCKED 660 KLHKITGIFK YPTLEEALVR LRTHPVGATL LGFDGWDGDQ IYRGPCSKKA KLAGLHAVIM 720 IDCLKIHGET VVVCKSSSGT DLGMEGYKGY IVVSVQVMLM IAGKTETEEN RGHRNCQVKP 780 QHLLYDFYSV DMDYKEPRFD KEDTEQKRKN EKFKVKIERY SQQVPPRIQG DHKRKQHQKH 840 GKPQKRHNNL SLRGTKDSDS VVMDYVENVS GVKVFDPHHH HIDQMTIPSS LVEDVYDCWF 900 ESGSMPYAHI HYPFENKELI EKNFPGHFVA EGLDQTRGWF YTLMVLSTAL HRKSVVRNVI 960 CNGLVLAEDG EKISKKLQNY PPPLDLIDEY GADALWLYLI NSLVVHAEPL RFKKGVLGVV 1020 KDVLLPFTWY NADGFLVQNA RRLEIESCGP FVASDLEALQ SSNVLDQWIQ SATQSLVHFF 1080 RQEMDGYRLY TVHVIFIMNH DMVCSLLLAK FLHLSALKQR GEMIEQRVTW MMTIIDLSRN 1140 IHERHSVKEM IVAHRDAEFL NDM* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ile_A | 8e-31 | 875 | 1087 | 488 | 698 | ISOLEUCYL-TRNA SYNTHETASE |
| 1jzq_A | 8e-31 | 875 | 1087 | 488 | 698 | Isoleucyl-tRNA synthetase |
| 1jzs_A | 8e-31 | 875 | 1087 | 488 | 698 | Isoleucyl-tRNA synthetase |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 337099 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AF157556 | 2e-96 | AF157556.1 Arabidopsis thaliana meiotic asynaptic mutant 1 (ASY1) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020866691.1 | 0.0 | uncharacterized protein LOC9327581 | ||||
| TrEMBL | D7KEY6 | 0.0 | D7KEY6_ARALL; Uncharacterized protein | ||||
| STRING | fgenesh1_pg.C_scaffold_1003664 | 0.0 | (Arabidopsis lyrata) | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | 337099 |
| Entrez Gene | 9327581 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|