PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

33640

Organism

Ostreococcus lucimarinus

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 154aa MW: 17674.2 Da PI: 11.2746

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
33640	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.1	4e-05	91	124	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 ++ p++ee+++LA+++g +e + ++F N Ra+ 33640 91 HPFPTREEKRRLAREIGSSEFAIGNFFINARARF 124 688*****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.41	64	127	IPR001356	Homeobox domain
SMART	SM00389	0.0014	66	131	IPR001356	Homeobox domain
CDD	cd00086	1.48E-5	67	123	No hit	No description
SuperFamily	SSF46689	1.63E-12	67	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.3E-16	70	129	IPR009057	Homeodomain-like
Pfam	PF05920	7.1E-13	84	123	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MRDDALAAYE RRLDDVERRF ETLRAKMELT LPSGITKCAR SGIRAAFASA RLRAEKARAV 60 ASRDAEPRRR RLGSKEGQRV LRSWILAHFD HPFPTREEKR RLAREIGSSE FAIGNFFINA 120 RARFHKPLVM ALADELEREG VDVLNARDEE RVR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000589	0.0	CP000589.1 Ostreococcus lucimarinus CCE9901 chromosome 9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001419838.1	1e-104	predicted protein
TrEMBL	A4S314	1e-103	A4S314_OSTLU; Uncharacterized protein
STRING	ABO98131	1e-103	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3210	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	2e-13	TALE family protein

Link Out ? help Back to Top
Phytozome	33640