PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 335587 | ||||||||
Common Name | ARALYDRAFT_335587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | YABBY | ||||||||
Protein Properties | Length: 237aa MW: 26589 Da PI: 6.3404 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 257.9 | 1.6e-79 | 6 | 175 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 ++ + ++q+C+vqC+fC+til+vsvP+tsl++vvtvrCGhCtsllsvnl+kas +lla+ shlde++kee+++++ veee++k+n+eke+s++t vss 335587 6 HLLDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASfiplHLLASLSHLDETGKEEVAATDAVEEEAWKVNQEKENSPTTLVSS-- 106 667899*********************************************9999999******************************************9.. PP YABBY 101 lsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s+nede+v+rv++ v++PPekrqr+Psayn+fikeei+r+ka+nP+++h+eafs+aaknWahfP++h++ 335587 107 -SDNEDEDVSRVYQvVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPVHNK 175 .99***********899***************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.0E-61 | 11 | 174 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.41E-9 | 116 | 171 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.1E-6 | 122 | 171 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 0.00393 | 130 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MTTLNHLLDL PGQICHVQCG FCTTILLVSV PFTSLSMVVT VRCGHCTSLL SVNLMKASFI 60 PLHLLASLSH LDETGKEEVA ATDAVEEEAW KVNQEKENSP TTLVSSSDNE DEDVSRVYQV 120 VNKPPEKRQR APSAYNCFIK EEIRRLKAQN PSMAHKEAFS LAAKNWAHFP PVHNKRAASD 180 QCFCEEDNNA ILPCNAFEDH EESNNGFRER KAQRHSIWGK SPFEYNNLGY EILTKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 335587 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF195047 | 0.0 | AF195047.1 Arabidopsis thaliana INNER NO OUTER (INO) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002890581.2 | 1e-178 | axial regulator YABBY 4 isoform X2 | ||||
Swissprot | Q9LDT3 | 1e-166 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | D7KNF6 | 1e-177 | D7KNF6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_1002152 | 1e-177 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8044 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-138 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | 335587 |
Entrez Gene | 9326643 |
Publications ? help Back to Top | |||
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