PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 335174 | ||||||||
Common Name | ARALYDRAFT_335174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 1097aa MW: 121472 Da PI: 6.7102 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.5 | 1.9e-21 | 126 | 217 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++g 335174 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRIGL 217 99*****************************954.4444.48***********************************************97764 PP | |||||||
2 | Auxin_resp | 118.5 | 5.6e-39 | 266 | 348 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F++++nPras+seF+v+++k++kal+ +vs+GmRf+m+feted+ rr++Gtv+g+sdldpvrW++S+Wr+L+ 335174 266 AAHANANSSPFTIFFNPRASPSEFIVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQ 348 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.15E-41 | 116 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-38 | 120 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.37E-20 | 125 | 219 | No hit | No description |
Pfam | PF02362 | 1.2E-19 | 126 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.35 | 126 | 242 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-19 | 126 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.5E-34 | 266 | 348 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.8E-9 | 966 | 1054 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.801 | 968 | 1061 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.63E-8 | 982 | 1046 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1097 aa Download sequence Send to blast |
MKAPSNGFLP TSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ 60 TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRIGLSSS HKGTWVCRDE KSQLMLGIRR 240 ANRQTPTLSS SVISSDSMHI GILAAAAHAN ANSSPFTIFF NPRASPSEFI VPLAKYNKAL 300 YAQVSLGMRF RMMFETEDCG VRRYMGTVTG ISDLDPVRWK GSQWRNLQVG WDESTAGDRP 360 SRVSIWEIEP VITPFYICPP PFFRPKYPRQ PGMPDDELDM ENAFKRAMPW MGEDFGMKDA 420 QSSMFPGLSL VQWMSMQQNN PLSGSATPQL PSALSSYNLP NNFASNDPSK LLNFQSPNLS 480 SANSQFNKSN TVNHISQQMQ AQPAMVKSLQ QQQQQQQQQL QQQQQQQLQI SHQQLQQQGN 540 YSNGASAVAN QVSCQNPNQP TGFSQSQLQQ QSMLPSGAKM IHQNINSVGN KGSSQMTSFV 600 QEMQFQQQLE LHNSSQLLRN QQEQSSLHSS QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL 660 LQKLQQQQQQ QSVPPVSSSL QPQLSVLQQT QSHQLQQLLS SQNQQPLAHG NNSFSASTFM 720 QPPQIQVSHQ QQEQMNNKNL VAAGQSHSGH TDGEAPSCST SPSANHTGHD NVSPTNFLSR 780 NQQQGQAASV SASDSVFDRA SNPVQEHYTK TESRFNQGMV NLKSGGEQFR FKGAVTDQID 840 VSTAGATYCP DVVGPAQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDVLYSQK 900 DFQNLVPNYG NAPRDIETEL SSAAISSQSF GIPSIPFKSG CSNEVGGIND SGIMNGGGLW 960 PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED PLTSDWKLVY 1020 TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPITNQ ACSETDSGNA 1080 WKVHYEDTSA AASFNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-168 | 15 | 369 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 335174 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU53672 | 0.0 | U53672.2 Arabidopsis thaliana early auxin-induced IAA22 mRNA, complete cds. | |||
GenBank | AY669794 | 0.0 | AY669794.1 Arabidopsis thaliana clone C105352 ARF19 (At1g19220) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870042.1 | 0.0 | auxin response factor 19 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | D7KHB3 | 0.0 | D7KHB3_ARALL; Auxin response factor | ||||
STRING | fgenesh1_pg.C_scaffold_1001739 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | 335174 |
Entrez Gene | 9329096 |