PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

335144

Common Name

ARALYDRAFT_335144

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WRKY

Protein Properties

Length: 483aa MW: 52869.5 Da PI: 7.1434

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
335144	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.5	3.7e-30	195	254	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+rs+ed ++++ tYeg+Hnh+ 335144 195 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAaSCPVRKQVQRSSEDMSILISTYEGTHNHP 254 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.3E-31	180	256	IPR003657	WRKY domain
SuperFamily	SSF118290	1.15E-26	188	256	IPR003657	WRKY domain
PROSITE profile	PS50811	28.908	190	256	IPR003657	WRKY domain
SMART	SM00774	7.0E-35	195	255	IPR003657	WRKY domain
Pfam	PF03106	2.3E-26	196	254	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MEEAKEENRR LKSSLSKIKK DFDILQAQYH QLMVQHKELN KFSSKGHHQD KEKDENEDKE 60 IVNEREELVS LSLGRRLKSP VSSGLMTNKE EKSKDIMEEA GDNKNLDDNE KGSNQGLSVG 120 IEYKALNNPN EKLDIDHIQE TMSLKISNNN KILSENSYGF KNDGDDNEDE DEILPQNLVK 180 KTRVSVRSRC ETPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTIAASCPVR KQVQRSSEDM 240 SILISTYEGT HNHPLPMSAT AMASATSAAA SMLLSGASSS SSTAADLQGL NFSLSGNNIT 300 PKPKSPFLQS SSSPSSSGHP TVTLDLTTSS SSQQPFLSML NRFSSPPSNV SRSNSYPSTN 360 LNFSNNTNTL MNWGGGGGGN PNDQYRAAYS NINTHQQSRT AGSSFDPFGR SSSSHPLQTN 420 LDHIGIKNIK TPQVPYIPAE TIKAITTDPN FQSALATALS SIIGGDLKID HNVTRNEAEK 480 SP*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MEEAKEENRR LKSSLSKIKK DFDILQAQYH QLMVQHKELN KFSSKGHHQD KEKDENEDKE  60
IVNEREELVS LSLGRRLKSP VSSGLMTNKE EKSKDIMEEA GDNKNLDDNE KGSNQGLSVG  120
IEYKALNNPN EKLDIDHIQE TMSLKISNNN KILSENSYGF KNDGDDNEDE DEILPQNLVK  180
KTRVSVRSRC ETPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTIAASCPVR KQVQRSSEDM  240
SILISTYEGT HNHPLPMSAT AMASATSAAA SMLLSGASSS SSTAADLQGL NFSLSGNNIT  300
PKPKSPFLQS SSSPSSSGHP TVTLDLTTSS SSQQPFLSML NRFSSPPSNV SRSNSYPSTN  360
LNFSNNTNTL MNWGGGGGGN PNDQYRAAYS NINTHQQSRT AGSSFDPFGR SSSSHPLQTN  420
LDHIGIKNIK TPQVPYIPAE TIKAITTDPN FQSALATALS SIIGGDLKID HNVTRNEAEK  480
SP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	182	256	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	335144

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF452175	0.0	AF452175.1 Arabidopsis thaliana WRKY transcription factor 61 (WRKY61) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002890302.2	0.0	probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	D7KH78	0.0	D7KH78_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_1001709	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Link Out ? help Back to Top
Phytozome	335144
Entrez Gene	9329084

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]