PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 335126
Common NameARALYDRAFT_335126
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 272aa    MW: 31292.1 Da    PI: 5.3041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
335126genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++lv +++++G  +W++ +++ g+ R++k+c++rw++yl
           335126 14 KGEWTAEEDQKLVAYINEHGICDWRSLPKRAGLQRCGKSCRLRWLNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding58.12.1e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e ++++++ lG++ W+tIa+ m+ +Rt++++k++w++ 
           335126  67 RGKFTPQEEEDIIQLHAVLGNR-WATIAKQMQ-NRTDNDIKNHWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.904961IPR017930Myb domain
SuperFamilySSF466892.73E-2911108IPR009057Homeodomain-like
SMARTSM007172.6E-131363IPR001005SANT/Myb domain
PfamPF002493.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-231568IPR009057Homeodomain-like
CDDcd001671.08E-101661No hitNo description
PROSITE profilePS5129426.40862116IPR017930Myb domain
SMARTSM007177.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.5E-1667111IPR001005SANT/Myb domain
CDDcd001671.54E-969109No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRTTWFDDE GMKKGEWTAE EDQKLVAYIN EHGICDWRSL PKRAGLQRCG KSCRLRWLNY  60
LRPGIRRGKF TPQEEEDIIQ LHAVLGNRWA TIAKQMQNRT DNDIKNHWNS CLKKRLSRKG  120
IDPMTHEPII KHLTIKTTNA DCSSSSTTTS PSLESPHSSG SARLLNKLAA GISSRQHSLD  180
RIKYIFSKPI IESNDQVKEE EEEKEEGEEK EEGEEKDSMM DQKIDGSEGD DIQIWDVEEV  240
RRLMEIGAME YEMTSYDAVM YDSTHILDHL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap335126
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0651660.0AY065166.1 Arabidopsis thaliana Putative MYB47 transcription factor (F6a14.18) mRNA, complete cds.
GenBankAY1145790.0AY114579.1 Arabidopsis thaliana Putative MYB47 transcription factor (At1g18710) mRNA, complete cds.
GenBankAY5195560.0AY519556.1 Arabidopsis thaliana MYB transcription factor (At1g18710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890295.10.0transcription factor MYB34
TrEMBLD7KH580.0D7KH58_ARALL; AtMYB47
STRINGfgenesh1_pg.C_scaffold_10016910.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-148myb domain protein 47