PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 333558 | ||||||||
Common Name | ARALYDRAFT_333558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 25099.2 Da PI: 6.8896 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135 | 5e-42 | 4 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 p+GfrF+Ptdee+v++yL+ k +++ +++evi++vdi+++ePw+Lp + ++k+++ w+fF ++++ky++g+r+ r+tksg+Wk+tg + ++++k ++e+ 333558 4 PVGFRFRPTDEEIVDHYLRVKNLESDtSHVDEVISTVDICSLEPWNLPsQsMIKSSDAVWHFFGRKENKYNRGDRQMRKTKSGFWKKTGVTINIMRKrgNREK 106 89*****************99666553778889**************96347888999**************************************9877888 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g kk+L+fy +k+ k+dWvmhey++ 333558 107 IGEKKVLMFYF---NKSLKSDWVMHEYHA 132 **********4...45568********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.669 | 3 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-44 | 3 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-23 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVNPVGFRFR PTDEEIVDHY LRVKNLESDT SHVDEVISTV DICSLEPWNL PSQSMIKSSD 60 AVWHFFGRKE NKYNRGDRQM RKTKSGFWKK TGVTINIMRK RGNREKIGEK KVLMFYFNKS 120 LKSDWVMHEY HATFSSPNLM TYTLCKVKFK GESREGSVSS GSGIELTHSL IPHTNDFGVF 180 SVETEEETQL EDAVRRAINN ISTDDWDSLF NDDEQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-24 | 4 | 155 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-24 | 4 | 155 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-24 | 4 | 155 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-24 | 4 | 155 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-24 | 4 | 155 | 21 | 173 | NAC domain-containing protein 19 |
3swm_B | 6e-24 | 4 | 155 | 21 | 173 | NAC domain-containing protein 19 |
3swm_C | 6e-24 | 4 | 155 | 21 | 173 | NAC domain-containing protein 19 |
3swm_D | 6e-24 | 4 | 155 | 21 | 173 | NAC domain-containing protein 19 |
3swp_A | 6e-24 | 4 | 155 | 21 | 173 | NAC domain-containing protein 19 |
3swp_B | 6e-24 | 4 | 155 | 21 | 173 | NAC domain-containing protein 19 |
3swp_C | 6e-24 | 4 | 155 | 21 | 173 | NAC domain-containing protein 19 |
3swp_D | 6e-24 | 4 | 155 | 21 | 173 | NAC domain-containing protein 19 |
3ulx_A | 7e-24 | 4 | 130 | 16 | 138 | Stress-induced transcription factor NAC1 |
4dul_A | 6e-24 | 4 | 155 | 18 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-24 | 4 | 155 | 18 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 333558 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866030.1 | 1e-157 | LOW QUALITY PROTEIN: NAC domain-containing protein 5 | ||||
Swissprot | O81914 | 1e-105 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | D7KB65 | 1e-160 | D7KB65_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_1000123 | 1e-161 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 4e-98 | NAC domain containing protein 5 |
Link Out ? help Back to Top | |
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Phytozome | 333558 |
Entrez Gene | 9328156 |
Publications ? help Back to Top | |||
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