PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 333558
Common NameARALYDRAFT_333558
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 217aa    MW: 25099.2 Da    PI: 6.8896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
333558genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1355e-4241322128
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 
             p+GfrF+Ptdee+v++yL+ k  +++  +++evi++vdi+++ePw+Lp + ++k+++  w+fF ++++ky++g+r+ r+tksg+Wk+tg + ++++k  ++e+
  333558   4 PVGFRFRPTDEEIVDHYLRVKNLESDtSHVDEVISTVDICSLEPWNLPsQsMIKSSDAVWHFFGRKENKYNRGDRQMRKTKSGFWKKTGVTINIMRKrgNREK 106
             89*****************99666553778889**************96347888999**************************************9877888 PP

     NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
             +g kk+L+fy    +k+ k+dWvmhey++
  333558 107 IGEKKVLMFYF---NKSLKSDWVMHEYHA 132
             **********4...45568********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.6693150IPR003441NAC domain
SuperFamilySSF1019413.4E-443150IPR003441NAC domain
PfamPF023653.8E-234131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVNPVGFRFR PTDEEIVDHY LRVKNLESDT SHVDEVISTV DICSLEPWNL PSQSMIKSSD  60
AVWHFFGRKE NKYNRGDRQM RKTKSGFWKK TGVTINIMRK RGNREKIGEK KVLMFYFNKS  120
LKSDWVMHEY HATFSSPNLM TYTLCKVKFK GESREGSVSS GSGIELTHSL IPHTNDFGVF  180
SVETEEETQL EDAVRRAINN ISTDDWDSLF NDDEQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-24415518170NO APICAL MERISTEM PROTEIN
1ut4_B6e-24415518170NO APICAL MERISTEM PROTEIN
1ut7_A6e-24415518170NO APICAL MERISTEM PROTEIN
1ut7_B6e-24415518170NO APICAL MERISTEM PROTEIN
3swm_A6e-24415521173NAC domain-containing protein 19
3swm_B6e-24415521173NAC domain-containing protein 19
3swm_C6e-24415521173NAC domain-containing protein 19
3swm_D6e-24415521173NAC domain-containing protein 19
3swp_A6e-24415521173NAC domain-containing protein 19
3swp_B6e-24415521173NAC domain-containing protein 19
3swp_C6e-24415521173NAC domain-containing protein 19
3swp_D6e-24415521173NAC domain-containing protein 19
3ulx_A7e-24413016138Stress-induced transcription factor NAC1
4dul_A6e-24415518170NAC domain-containing protein 19
4dul_B6e-24415518170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap333558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866030.11e-157LOW QUALITY PROTEIN: NAC domain-containing protein 5
SwissprotO819141e-105NAC5_ARATH; NAC domain-containing protein 5
TrEMBLD7KB651e-160D7KB65_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10001231e-161(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-98NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]