PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 332063 | ||||||||
Common Name | ARALYDRAFT_332063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 298aa MW: 34292.5 Da PI: 5.0528 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.8e-18 | 13 | 104 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k++ + ++ +rlv+p+ + + + ++ ++t +l+ ++g W+vk + ++++ + +++GW++Fvk+ngL ++Df++F++dg ++f +v+++r+ 332063 13 FLKIF-N-SHEHAQRLVIPRGYNKYYPNP--LPQTAVLKKPEGSFWNVKW--TISQEEtIRFQEGWEKFVKDNGLIDRDFLLFTYDGCRSF--WVRIHRN 104 66666.4.4455567*******9666644..889****************..555555599***********************9885555..**99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-20 | 9 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-19 | 10 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.78E-16 | 11 | 103 | No hit | No description |
PROSITE profile | PS50863 | 13.197 | 11 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-16 | 13 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-17 | 13 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-4 | 201 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-6 | 201 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.28 | 206 | 296 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MELENGFPPY PDFLKIFNSH EHAQRLVIPR GYNKYYPNPL PQTAVLKKPE GSFWNVKWTI 60 SQEETIRFQE GWEKFVKDNG LIDRDFLLFT YDGCRSFWVR IHRNGLPLEP TAPIKIQEIS 120 DDEDDTIGHG DHHMEEGDSH ENMIVSLSLG SSDEADDDDD YDTTICEVNK ASESSKKGRL 180 ARKHRADSIA ASIDPETYLD DPKNPFFIST SSCSRRVLVI ARQVIKDYDL NFDGTIKLID 240 GFGELTRKVG KWKDRVVVYK WDEMFTRNKA NQGDAIICEV IREEDVVRSI KVHFVKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-13 | 13 | 106 | 11 | 103 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 332063 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493797 | 0.0 | AB493797.1 Arabidopsis thaliana At5g57720 mRNA for hypothetical protein, partial cds, clone: RAAt5g57720. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866225.1 | 0.0 | B3 domain-containing protein At5g57720 isoform X2 | ||||
Swissprot | Q9FHH1 | 1e-175 | Y5772_ARATH; B3 domain-containing protein At5g57720 | ||||
TrEMBL | D7MNV0 | 0.0 | D7MNV0_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_8001406 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13797 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57720.1 | 1e-175 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 332063 |
Entrez Gene | 9300602 |
Publications ? help Back to Top | |||
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