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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
331146 |
| Common Name | ARALYDRAFT_331146 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 333aa MW: 37050.9 Da PI: 9.5325 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 331146 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 349.5 | 7.4e-107 | 1 | 332 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyyepaaslken.lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..... 92
mdd g+re r+k+ + + ++++ +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al+++ens++
331146 1 MDDGGHREngRHKAAAQGQWLMQHQpSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVtaaat 100
999999988898886554423332212359***************************************************************99999** PP
GAGA_bind 93 ..salpvgvqvlsgtksidslqqlse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184
sa+p+g+q+++g+k++++ +++++ pql+++a+e+re+e ++ lp++ a +a e++k+k+++r k+pk++ ++ ++k+++k+++kvkkes+d
331146 101 nmSACPPGCQISRGVKHLHHPHMHHHhqqhhiPQLTENAYETREMEPNDGLPTSPPAGSALESAKPKRGKRVKDPKATAQTTANKRGPKNQRKVKKESDD 200
999*****************99976679999*******************************************************************88 PP
GAGA_bind 185 .er.......................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
+ sk+++ks+++ +ln+v +De+t+P+PvCsCtG+ WqS+CCttt+S+yPLP+ +++r+aR++grK
331146 201 dLNkimfvktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGV-----------WQSSCCTTTLSMYPLPALPNKRHARVGGRK 289
5448********************************88*******************97...........****************************** PP
GAGA_bind 260 mSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
mS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
331146 290 MSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 332
*****************88***********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MDDGGHRENG RHKAAAQGQW LMQHQPSMKQ VMSIIAERDA AIQERNLAIS EKKAAVAERD 60
MAFLQRDTAI AERNNAIMER DSALTALQYR ENSMVTAAAT NMSACPPGCQ ISRGVKHLHH 120
PHMHHHHQQH HIPQLTENAY ETREMEPNDG LPTSPPAGSA LESAKPKRGK RVKDPKATAQ 180
TTANKRGPKN QRKVKKESDD DLNKIMFVKT THDYTEEDSS KHILIGSKSD WKSQEMVGLN 240
QVVYDETTMP PPVCSCTGVW QSSCCTTTLS MYPLPALPNK RHARVGGRKM SGSAFNKLLS 300
RLAAEGHHDL SNPVDLKDHW AKHGTNRYIT IK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY088564 | 0.0 | AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence. |
| GenBank | AY380572 | 0.0 | AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds. |
