PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 330738 | ||||||||
Common Name | ARALYDRAFT_330738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 290aa MW: 33382.2 Da PI: 10.076 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.1 | 3.8e-19 | 19 | 111 | 1 | 96 |
EEEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvl.tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkvl + dv+++ + lp +f++++ k+ ++++++++grsWev + +k+++ y+ ++GW +Fv++n L ++f++F+++g++ f+l+ + 330738 19 FFKVLqSVVDVSSETLRALPHDFVRSFTDKE-LFGKMKIRTQWGRSWEVGI--SKNPRFyYMEKSGWDRFVRDNSLGNNEFITFTHKGNMHFTLN--I 111 566662335777788889*********7665.5559***************..******566669***********************9999554..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-18 | 13 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-18 | 15 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.37E-16 | 18 | 113 | No hit | No description |
SMART | SM01019 | 9.8E-19 | 19 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-17 | 19 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 20 | 115 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.177 | 198 | 289 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-12 | 200 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-13 | 200 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-14 | 201 | 289 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.29E-8 | 208 | 285 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MATNPDFLRC KEERNNESFF KVLQSVVDVS SETLRALPHD FVRSFTDKEL FGKMKIRTQW 60 GRSWEVGISK NPRFYYMEKS GWDRFVRDNS LGNNEFITFT HKGNMHFTLN IFKLDGKEMM 120 QPPQSRALLA SSSRFKTEQG EDDKKEEVVS ELSDRGRTTA AESNGRKLNL RKKAAEESQE 180 SKRTEKLGAF SLVIFSTATE FTSLVKQGYL KFLRLRTSVA KDHMPDEKTM FKIHHPNGKK 240 CWDVVYLGRF GVFSGGWSRL VKEYPLVVGD TCKFTFIKPE ELLLVVSKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 330738 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002863383.1 | 0.0 | B3 domain-containing protein At2g16210 | ||||
Swissprot | Q5BPT7 | 1e-149 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | D7MQM8 | 0.0 | D7MQM8_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_8000081 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.1 | 1e-151 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 330738 |
Entrez Gene | 9299459 |
Publications ? help Back to Top | |||
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