PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 330465
Common NameARALYDRAFT_330465
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 263aa    MW: 30157.2 Da    PI: 7.5626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
330465genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-1256100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + +WT+ Ed +l+++ ++ G   W+tIa+++  gRt+kqc++rw+++
           330465  56 KVKWTESEDIKLKELMAL-GLQKWTTIAKKFE-GRTGKQCRERWHNH 100
                      579***********9875.5555*********.************97 PP
2Myb_DNA-binding43.85.9e-14107151147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + +W++eE+++l++ +k  G+  W +Ia++++ gR+ +++k++w++ 
           330465 107 KTKWSEEEEQILIEEHKVVGTQ-WIKIAQKLP-GRSYNNVKNHWNST 151
                      579*****************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-64994IPR009057Homeodomain-like
PROSITE profilePS5129416.88551101IPR017930Myb domain
SMARTSM007175.0E-1055103IPR001005SANT/Myb domain
CDDcd001671.07E-1058100No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2258109IPR009057Homeodomain-like
PfamPF139215.3E-1559116No hitNo description
SuperFamilySSF466896.27E-2681160IPR009057Homeodomain-like
PROSITE profilePS5129423.842102156IPR017930Myb domain
SMARTSM007174.3E-12106154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-17110154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGEPQSFDVP VPKGIKNTTK EIMNQREDGK MKKTYQKKKK KAVSTSKYLK NSDIIKVKWT  60
ESEDIKLKEL MALGLQKWTT IAKKFEGRTG KQCRERWHNH AGPDIKKTKW SEEEEQILIE  120
EHKVVGTQWI KIAQKLPGRS YNNVKNHWNS TKRKVQNQSG GTVKPVGNNI LENYIRYVTI  180
NNDDFLKTAE SDGETTNSEN DDDSIDMLYG EMNLSLEATA ETTKPLTDAS TILPYIPMPE  240
ENSTVEVCKT MEDILELLSW WE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-36531554108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap330465
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1760040.0AF176004.1 Arabidopsis thaliana putative transcription factor (MYB100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874717.10.0transcription factor MYB115 isoform X2
TrEMBLD7MJ770.0D7MJ77_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70026920.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40430.11e-117myb domain protein 22