PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

32976

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

G2-like

Protein Properties

Length: 1195aa MW: 132837 Da PI: 6.9973

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
32976	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	41.3	3.5e-13	571	624	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+rWt e+ + F ave+LGG + At k++ e+++ +++t+++ +S LQk+R 32976 571 TRRRWTAEMVADFEVAVERLGGVDAATGKKLAEALSAHDVTRDQCASRLQKHRE 624 79**************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	2.4E-15	33	74	IPR003349	JmjN domain
PROSITE profile	PS51183	15.227	34	75	IPR003349	JmjN domain
Pfam	PF02375	1.9E-15	35	68	IPR003349	JmjN domain
SMART	SM00558	1.9E-45	178	344	IPR003347	JmjC domain
PROSITE profile	PS51184	35.131	181	344	IPR003347	JmjC domain
SuperFamily	SSF51197	1.18E-30	190	344	No hit	No description
Pfam	PF02373	1.1E-37	211	327	IPR003347	JmjC domain
Pfam	PF02928	2.8E-10	429	481	IPR004198	Zinc finger, C5HC2-type
SuperFamily	SSF46689	9.85E-10	569	628	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-12	570	627	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-9	572	625	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1195 aa Download sequence Send to blast
MSARRDVDAR HASTSEKDSE RKPSRTTTAD IASAPTFRPT LEEFADPIAY LSSIEARARE 60 AGICKVIPPR GAAPRWNGEA WRRDDARFET KLQNVHSLSE GRTFQFGKEY AKGEYEAMAK 120 AYEERWAKER PDVDANDANA LERAFWDMVE TRSEQARVEY GNDLDTKIFG TGFGVDENGE 180 KHPWDFEHLY SHPLNLLRVV EHDIPGLTKP WLYLGMLFAT FCWHVEDHFL CSLNYLHRGA 240 AKTWYGVPGS DAEAFENCAR ATVPRLFEQA PDILHQIVTI VPPGVLVDHG VKVVHTVQQP 300 GEFVVTFPRA YHAGFSHGFN VAEAVNFGHV NWLDFGRRAI DVYSTGSFKR NAVFAHHRLV 360 SRAAETFVEV LGKNARLVKS KAMGAIVSTL RKELETILSD EEIYRASLVR RGLNIEIVQA 420 PNEDDDACCI RCKAMPFLSV VRCKCLPTAV RCLRHAMDAC DCAAGERTLE IRVVDSRLRE 480 LIKALFFGDG IQTKNDAAKA RVDFSANVNR VAVNRAPPPK PKVVLPKPKT VKPPPTRAVL 540 ASPPPTRIVA SKADDAFTAR GLPRKRAKCE TRRRWTAEMV ADFEVAVERL GGVDAATGKK 600 LAEALSAHDV TRDQCASRLQ KHREKIKSNA DARATFMASK RPRGDATDAS TPRARVSEED 660 ARAPVSLKSL LERWNLGDVV NTAGVSRRIK CRLVPVCRTK DDERARIARG EPVICASAEY 720 ASEVFDAIGT ARDGLAWATR SSFSNFDAER GKVAMRSGWG APGTHVLSNR DMTIVTSFAE 780 VVDPANEKPL NLQMFHREDT AVPVLSRKLK WPSEEEFFGI EGEDAPGRLL DDATRVSARG 840 AMTWWHLDDC GEFVCQVGLP EAGEAAEDVL LGPTGKPVVK LFIFAQRKDY AWVAQDAEMN 900 KSYKNCALDL FDTPDHYYPT ASEMCHPSSA PLDVSSPKAF DGAATSDDAE DPCPTFWVAP 960 LEAGGPPLLS PPNIIHCVLT VRDCVMCEER RLSLAYMDEV LYFQRRAARW CEPPIFYAFV 1020 REDLSDTEKA RSNAMRPLVK MLNDLKRVGA TDGDAYRFAR CLTSLRVLAN HSPEFYALDA 1080 DGVAEARKSI DKLESWLADD SNCEFVEKIQ AAVKADPRAV EDAELAESMM SETLGVLNLA 1140 DGRSCAVVHE RGRPRWGPVR NSKSLVDKDR KDMKNAIRSG TLDALLLAYR RDII*

Sequence ? help Back to Top

Protein Sequence Length: 1195 aa Download sequence Send to blast

MSARRDVDAR HASTSEKDSE RKPSRTTTAD IASAPTFRPT LEEFADPIAY LSSIEARARE  60
AGICKVIPPR GAAPRWNGEA WRRDDARFET KLQNVHSLSE GRTFQFGKEY AKGEYEAMAK  120
AYEERWAKER PDVDANDANA LERAFWDMVE TRSEQARVEY GNDLDTKIFG TGFGVDENGE  180
KHPWDFEHLY SHPLNLLRVV EHDIPGLTKP WLYLGMLFAT FCWHVEDHFL CSLNYLHRGA  240
AKTWYGVPGS DAEAFENCAR ATVPRLFEQA PDILHQIVTI VPPGVLVDHG VKVVHTVQQP  300
GEFVVTFPRA YHAGFSHGFN VAEAVNFGHV NWLDFGRRAI DVYSTGSFKR NAVFAHHRLV  360
SRAAETFVEV LGKNARLVKS KAMGAIVSTL RKELETILSD EEIYRASLVR RGLNIEIVQA  420
PNEDDDACCI RCKAMPFLSV VRCKCLPTAV RCLRHAMDAC DCAAGERTLE IRVVDSRLRE  480
LIKALFFGDG IQTKNDAAKA RVDFSANVNR VAVNRAPPPK PKVVLPKPKT VKPPPTRAVL  540
ASPPPTRIVA SKADDAFTAR GLPRKRAKCE TRRRWTAEMV ADFEVAVERL GGVDAATGKK  600
LAEALSAHDV TRDQCASRLQ KHREKIKSNA DARATFMASK RPRGDATDAS TPRARVSEED  660
ARAPVSLKSL LERWNLGDVV NTAGVSRRIK CRLVPVCRTK DDERARIARG EPVICASAEY  720
ASEVFDAIGT ARDGLAWATR SSFSNFDAER GKVAMRSGWG APGTHVLSNR DMTIVTSFAE  780
VVDPANEKPL NLQMFHREDT AVPVLSRKLK WPSEEEFFGI EGEDAPGRLL DDATRVSARG  840
AMTWWHLDDC GEFVCQVGLP EAGEAAEDVL LGPTGKPVVK LFIFAQRKDY AWVAQDAEMN  900
KSYKNCALDL FDTPDHYYPT ASEMCHPSSA PLDVSSPKAF DGAATSDDAE DPCPTFWVAP  960
LEAGGPPLLS PPNIIHCVLT VRDCVMCEER RLSLAYMDEV LYFQRRAARW CEPPIFYAFV  1020
REDLSDTEKA RSNAMRPLVK MLNDLKRVGA TDGDAYRFAR CLTSLRVLAN HSPEFYALDA  1080
DGVAEARKSI DKLESWLADD SNCEFVEKIQ AAVKADPRAV EDAELAESMM SETLGVLNLA  1140
DGRSCAVVHE RGRPRWGPVR NSKSLVDKDR KDMKNAIRSG TLDALLLAYR RDII*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a1f_A	3e-91	34	502	9	475	LYSINE-SPECIFIC DEMETHYLASE 5B, LYSINE-SPECIFIC DEMETHYLASE 5B
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000588	0.0	CP000588.1 Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001419094.1	0.0	predicted protein
TrEMBL	A4S152	0.0	A4S152_OSTLU; Uncharacterized protein
STRING	ABO97387	0.0	(Ostreococcus 'lucimarinus')

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	2e-48	relative of early flowering 6

Link Out ? help Back to Top
Phytozome	32976